Click here to switch to the map view.

The map label for this gene is ytfH [C]

Identifier: 169630537

GI number: 169630537

Start: 3501390

End: 3501830

Strand: Direct

Name: ytfH [C]

Synonym: MAB_3456

Alternate gene names: 169630537

Gene position: 3501390-3501830 (Clockwise)

Preceding gene: 169630535

Following gene: 169630538

Centisome position: 69.1

GC content: 61.9

Gene sequence:

>441_bases
TTGGATTTCACGACCATGAGAAATTGTTCGATAAGCAATGCCCTCGACGTCATCGGGGAACGCTGGACCCTGGTGGCCCT
GCGCGAGATCATGCTGGGCAACCGCCGCTTCGAGACGATCGTTCGCAACACCGGAGCCAGTCGCGACATTCTGGCGACTC
GGCTTCGCAAGCTCGTGGACGCCGGGGTACTGGAGAAGCGCCGGTACGAAGACCGCCCGCCCCGCTACGAGTACCTGTTG
ACCCAGTCCGGCCAGGCCCTTCGGCCCGTGCTGTTCGCACTGATGGAGTGGGGAGACAAATTCGTCACGAAAGGGCCTCC
GCCCAGCATCTGGGAGCACCAATGCGGCTCAGTACTGCATATCCAGCCCACATGCGAAAGTTGCGGCGAGGCAGTGACCT
TCGACGATCTCACCCCACGGCGACTCGGACGAGTTCGGTGA

Upstream 100 bases:

>100_bases
GACCTACCTCCTGGATTCGCCGTTGAACTCCCTCATCTCGGTATACGCCCAGTAAGTTGGAAATCACAACTAACTGTGAT
CAACCACATAACGTGCTACG

Downstream 100 bases:

>100_bases
ACCCCAGGGCGTTGACGTACGAAGCCGCGGGCGCGACATCACCCTGTGAAAGCATCTGGTCCGCTGCGCCAGCGGGGCTA
CGGCGGTTTGAGCAGACCAT

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MDFTTMRNCSISNALDVIGERWTLVALREIMLGNRRFETIVRNTGASRDILATRLRKLVDAGVLEKRRYEDRPPRYEYLL
TQSGQALRPVLFALMEWGDKFVTKGPPPSIWEHQCGSVLHIQPTCESCGEAVTFDDLTPRRLGRVR

Sequences:

>Translated_146_residues
MDFTTMRNCSISNALDVIGERWTLVALREIMLGNRRFETIVRNTGASRDILATRLRKLVDAGVLEKRRYEDRPPRYEYLL
TQSGQALRPVLFALMEWGDKFVTKGPPPSIWEHQCGSVLHIQPTCESCGEAVTFDDLTPRRLGRVR
>Mature_146_residues
MDFTTMRNCSISNALDVIGERWTLVALREIMLGNRRFETIVRNTGASRDILATRLRKLVDAGVLEKRRYEDRPPRYEYLL
TQSGQALRPVLFALMEWGDKFVTKGPPPSIWEHQCGSVLHIQPTCESCGEAVTFDDLTPRRLGRVR

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16751; Mature: 16751

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTTMRNCSISNALDVIGERWTLVALREIMLGNRRFETIVRNTGASRDILATRLRKLVD
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHH
AGVLEKRRYEDRPPRYEYLLTQSGQALRPVLFALMEWGDKFVTKGPPPSIWEHQCGSVLH
HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEE
IQPTCESCGEAVTFDDLTPRRLGRVR
ECCCHHHHCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MDFTTMRNCSISNALDVIGERWTLVALREIMLGNRRFETIVRNTGASRDILATRLRKLVD
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHH
AGVLEKRRYEDRPPRYEYLLTQSGQALRPVLFALMEWGDKFVTKGPPPSIWEHQCGSVLH
HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEE
IQPTCESCGEAVTFDDLTPRRLGRVR
ECCCHHHHCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]