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The map label for this gene is ydcN [C]

Identifier: 169630258

GI number: 169630258

Start: 3222635

End: 3223231

Strand: Reverse

Name: ydcN [C]

Synonym: MAB_3176c

Alternate gene names: 169630258

Gene position: 3223231-3222635 (Counterclockwise)

Preceding gene: 169630261

Following gene: 169630257

Centisome position: 63.61

GC content: 62.31

Gene sequence:

>597_bases
ATGGACGATCAAAATCGGCGCATGGAGGCAGTGCTTGACGCGCTGGGACCGCGGCTGCGGGCCCTGCGCCTGCATCGTCA
GATCACGCTGGCGCAGTTGTCGGAGACCACGGGCATTTCGGAGAGCACCTTGTCACGCCTGGAATCCGGTCAGCGACGCC
CCACGCTAGAGCTCCTGCTGTTACTTGCCGAGGCCCATCAGGTGCCGCTCGACGAGCTGGTCAACGCACCCGCCACGGGA
GATCCGCGCGTTCACCCCAAACCGTTTAAGCGCAACGGGTCGATCTACCTGCCGCTGTCGCGGCGACCCGGCGGAATTCA
GTGCTTTAAGCAGATCATCCCGCCCCATTCGCCGAAGGGCGAACCGAATTTGAAGGTCCACGACGGATACGAGTGGATGT
ACGTGCTCGCCGGGAATCTCCGGTTGTTGTTGGGCGAGCTCGATCTCATTCTTCCCGCAGGTGAGGCCGCGGAGTTCGAC
ACCCATATCCCGCACTGGTTCGGCAATCCGACCGACAAACCCGTCGAGGTGTTGCATATTTTCGGCCCACAGGGTGAACG
GATGCACGTGCGGGCACGTTCGGGTTCGGGGAACTAG

Upstream 100 bases:

>100_bases
CTACATCCCAGAGTTTGTTCATGGCACCACTATTGGTGCGTAGCTGCTAAGTGCGCAACCTTTCTTGCCAAAGTGGCAAC
CTAGCGTCAGCATGGACCGT

Downstream 100 bases:

>100_bases
CGAAAGCCTGGGATACTGAATCGGTTATGCCTGCCGATAACAAGCCCTTGCCGCTGGTCTTCGACGCACCGCGTCGTGCC
ATGCCGCCCCGTCATCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MDDQNRRMEAVLDALGPRLRALRLHRQITLAQLSETTGISESTLSRLESGQRRPTLELLLLLAEAHQVPLDELVNAPATG
DPRVHPKPFKRNGSIYLPLSRRPGGIQCFKQIIPPHSPKGEPNLKVHDGYEWMYVLAGNLRLLLGELDLILPAGEAAEFD
THIPHWFGNPTDKPVEVLHIFGPQGERMHVRARSGSGN

Sequences:

>Translated_198_residues
MDDQNRRMEAVLDALGPRLRALRLHRQITLAQLSETTGISESTLSRLESGQRRPTLELLLLLAEAHQVPLDELVNAPATG
DPRVHPKPFKRNGSIYLPLSRRPGGIQCFKQIIPPHSPKGEPNLKVHDGYEWMYVLAGNLRLLLGELDLILPAGEAAEFD
THIPHWFGNPTDKPVEVLHIFGPQGERMHVRARSGSGN
>Mature_198_residues
MDDQNRRMEAVLDALGPRLRALRLHRQITLAQLSETTGISESTLSRLESGQRRPTLELLLLLAEAHQVPLDELVNAPATG
DPRVHPKPFKRNGSIYLPLSRRPGGIQCFKQIIPPHSPKGEPNLKVHDGYEWMYVLAGNLRLLLGELDLILPAGEAAEFD
THIPHWFGNPTDKPVEVLHIFGPQGERMHVRARSGSGN

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22084; Mature: 22084

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDQNRRMEAVLDALGPRLRALRLHRQITLAQLSETTGISESTLSRLESGQRRPTLELLL
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHH
LLAEAHQVPLDELVNAPATGDPRVHPKPFKRNGSIYLPLSRRPGGIQCFKQIIPPHSPKG
HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCC
EPNLKVHDGYEWMYVLAGNLRLLLGELDLILPAGEAAEFDTHIPHWFGNPTDKPVEVLHI
CCCEEEECCCEEEEEEECCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
FGPQGERMHVRARSGSGN
ECCCCCEEEEEECCCCCC
>Mature Secondary Structure
MDDQNRRMEAVLDALGPRLRALRLHRQITLAQLSETTGISESTLSRLESGQRRPTLELLL
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHH
LLAEAHQVPLDELVNAPATGDPRVHPKPFKRNGSIYLPLSRRPGGIQCFKQIIPPHSPKG
HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCC
EPNLKVHDGYEWMYVLAGNLRLLLGELDLILPAGEAAEFDTHIPHWFGNPTDKPVEVLHI
CCCEEEECCCEEEEEEECCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
FGPQGERMHVRARSGSGN
ECCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA