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The map label for this gene is ycdJ [C]

Identifier: 169630117

GI number: 169630117

Start: 3086561

End: 3087640

Strand: Direct

Name: ycdJ [C]

Synonym: MAB_3034

Alternate gene names: 169630117

Gene position: 3086561-3087640 (Clockwise)

Preceding gene: 169630116

Following gene: 169630118

Centisome position: 60.91

GC content: 65.0

Gene sequence:

>1080_bases
ATGAATCCTCCACCGCGGCTCCTGCGTCCGGTGCCGGATACCGAGCACATCGACGGGGTCGACGGCGGCGGCGATACGCC
ATCCGCAGCTACATCGACGCGTCCACGGCTGGCGTTCCGCACCATCCACGGGTACCGGCGCGCCTACCGGATCGCGGGCT
CGGGCCCGGTGCTGCTACTCATCCACGGTATCGGCGACAACTCGGCGACATGGGACAGTGTGCATGCGCAGCTCGCCGAG
CATTTCACCGTGATCGCCCCGGACCTGCTAGGGCATGGACAGTCCGATAAGCCACGCGCCGACTACTCGGTAGCGGCCTA
TGCCAATGGCATGCGGGACCTGCTGGCCGTGCTGGACATTGAGAGGGTCACCGTCGTTGGGCATTCGCTCGGTGGTGGCG
TCGCCATGCAATTCACCTACCAGTTCCCTCACCTGGTGGAGCGTCTCATCCTGGTGGCGCCGGGAGGCGTGACCAAGGAT
GTCAACATCGTGTTGCGTTGCGCGTCATTGCCGTTCATCGGAGATGCGCTGGGCCTGTTGAGGCTGCCAATGGCCATGCC
GATGCTCCGACTGGGCGGTGCGGTGGCGCGCGCGACGTTCGGCCGGGCGAGTATGGCCCGCGATATCCCCGATGTGCTGC
GCGTTCTCGCTGATCTCCCTGAACCCCGGGCCTCCGCCGCGTTCACCCGCACGCTGCGCGCGGTGGTGGACTGGCGCGGC
CAGGTGGTCACCATGCTGGACCGATGTTACTTGACCGAATCCGTTCCTGTTCAGCTCATTTGGGGTAGCGACGACCTGGT
CATTCCCGTCAGCCATGGACACCTCGCGCATGCCGCGATGCCCGGCTCCGCACTGGAGATCTTCGACAAATCCGGACATT
TCCCCTTCCATGACGACCCCGAACGATTCATCGGCATCGTTCGCCAATTCATCGCATCCACCGAGCCCGGCGAATACAAC
GAGGACGAACTGCGCCGATTGTTGCGAACCGGCGTCACCGAACACGCCATCAGTGGGGCCGCCCGCACCCGCATGGCGGT
GCTCGATGCGATGGGCACCGACGAACGCAGCGCCACTTAG

Upstream 100 bases:

>100_bases
CGGCGACGATCCCTCGGGTCCGTCACCGGAAGGCCCCATTCTCTAGCCGGGTTGTGCGCTCGCCGCGCCAAATTTGCGGC
GACGGGTCAAAATACTTCAC

Downstream 100 bases:

>100_bases
CGCGAGAGCTCAAGCGCTGTCAAAGATTTGCGCCAACTCCCGGGTACCCGAGTGCGCGCGGCGCAAGGGACGTAGAGTCG
AGGAATGAGCGTTGATGTCG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MNPPPRLLRPVPDTEHIDGVDGGGDTPSAATSTRPRLAFRTIHGYRRAYRIAGSGPVLLLIHGIGDNSATWDSVHAQLAE
HFTVIAPDLLGHGQSDKPRADYSVAAYANGMRDLLAVLDIERVTVVGHSLGGGVAMQFTYQFPHLVERLILVAPGGVTKD
VNIVLRCASLPFIGDALGLLRLPMAMPMLRLGGAVARATFGRASMARDIPDVLRVLADLPEPRASAAFTRTLRAVVDWRG
QVVTMLDRCYLTESVPVQLIWGSDDLVIPVSHGHLAHAAMPGSALEIFDKSGHFPFHDDPERFIGIVRQFIASTEPGEYN
EDELRRLLRTGVTEHAISGAARTRMAVLDAMGTDERSAT

Sequences:

>Translated_359_residues
MNPPPRLLRPVPDTEHIDGVDGGGDTPSAATSTRPRLAFRTIHGYRRAYRIAGSGPVLLLIHGIGDNSATWDSVHAQLAE
HFTVIAPDLLGHGQSDKPRADYSVAAYANGMRDLLAVLDIERVTVVGHSLGGGVAMQFTYQFPHLVERLILVAPGGVTKD
VNIVLRCASLPFIGDALGLLRLPMAMPMLRLGGAVARATFGRASMARDIPDVLRVLADLPEPRASAAFTRTLRAVVDWRG
QVVTMLDRCYLTESVPVQLIWGSDDLVIPVSHGHLAHAAMPGSALEIFDKSGHFPFHDDPERFIGIVRQFIASTEPGEYN
EDELRRLLRTGVTEHAISGAARTRMAVLDAMGTDERSAT
>Mature_359_residues
MNPPPRLLRPVPDTEHIDGVDGGGDTPSAATSTRPRLAFRTIHGYRRAYRIAGSGPVLLLIHGIGDNSATWDSVHAQLAE
HFTVIAPDLLGHGQSDKPRADYSVAAYANGMRDLLAVLDIERVTVVGHSLGGGVAMQFTYQFPHLVERLILVAPGGVTKD
VNIVLRCASLPFIGDALGLLRLPMAMPMLRLGGAVARATFGRASMARDIPDVLRVLADLPEPRASAAFTRTLRAVVDWRG
QVVTMLDRCYLTESVPVQLIWGSDDLVIPVSHGHLAHAAMPGSALEIFDKSGHFPFHDDPERFIGIVRQFIASTEPGEYN
EDELRRLLRTGVTEHAISGAARTRMAVLDAMGTDERSAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI145611434, Length=280, Percent_Identity=26.7857142857143, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI218777840, Length=115, Percent_Identity=32.1739130434783, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI13376164, Length=115, Percent_Identity=32.1739130434783, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI18777795, Length=100, Percent_Identity=35, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI32566936, Length=284, Percent_Identity=26.4084507042254, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17558492, Length=284, Percent_Identity=26.4084507042254, Blast_Score=75, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 38850; Mature: 38850

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPPRLLRPVPDTEHIDGVDGGGDTPSAATSTRPRLAFRTIHGYRRAYRIAGSGPVLLL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCEEEE
IHGIGDNSATWDSVHAQLAEHFTVIAPDLLGHGQSDKPRADYSVAAYANGMRDLLAVLDI
EEECCCCCCHHHHHHHHHHHHHEEECHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
ERVTVVGHSLGGGVAMQFTYQFPHLVERLILVAPGGVTKDVNIVLRCASLPFIGDALGLL
HHHEEEECCCCCCEEEEEEEHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCHHHHHHHH
RLPMAMPMLRLGGAVARATFGRASMARDIPDVLRVLADLPEPRASAAFTRTLRAVVDWRG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
QVVTMLDRCYLTESVPVQLIWGSDDLVIPVSHGHLAHAAMPGSALEIFDKSGHFPFHDDP
HHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCHHHCCCCCHHHHHCCCCCCCCCCCH
ERFIGIVRQFIASTEPGEYNEDELRRLLRTGVTEHAISGAARTRMAVLDAMGTDERSAT
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNPPPRLLRPVPDTEHIDGVDGGGDTPSAATSTRPRLAFRTIHGYRRAYRIAGSGPVLLL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCEEEE
IHGIGDNSATWDSVHAQLAEHFTVIAPDLLGHGQSDKPRADYSVAAYANGMRDLLAVLDI
EEECCCCCCHHHHHHHHHHHHHEEECHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
ERVTVVGHSLGGGVAMQFTYQFPHLVERLILVAPGGVTKDVNIVLRCASLPFIGDALGLL
HHHEEEECCCCCCEEEEEEEHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCHHHHHHHH
RLPMAMPMLRLGGAVARATFGRASMARDIPDVLRVLADLPEPRASAAFTRTLRAVVDWRG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
QVVTMLDRCYLTESVPVQLIWGSDDLVIPVSHGHLAHAAMPGSALEIFDKSGHFPFHDDP
HHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCHHHCCCCCHHHHHCCCCCCCCCCCH
ERFIGIVRQFIASTEPGEYNEDELRRLLRTGVTEHAISGAARTRMAVLDAMGTDERSAT
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]