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The map label for this gene is secD [H]

Identifier: 169629964

GI number: 169629964

Start: 2934724

End: 2936484

Strand: Reverse

Name: secD [H]

Synonym: MAB_2880c

Alternate gene names: 169629964

Gene position: 2936484-2934724 (Counterclockwise)

Preceding gene: 169629965

Following gene: 169629963

Centisome position: 57.95

GC content: 66.38

Gene sequence:

>1761_bases
GTGGCCTCGTCATCGGCCCCTGTGCATCCCATGCGCTACCTAGCTGCCTTCCTGGTGCTGCTCATCGGCGCCTACCTGCT
GGTATTCCTGACCGGCGACAAGCAGCCCAAGCCCAAGCTCGGTATCGATCTGCAGGGCGGCACCCGTGTCACCCTGACGG
CTCGCACCCCCGATGGGTCCAAGCCGACCAAGGAAGCGTTGACGCAGGCGCAGCAGATCATCAACGCGCGCGTCAACGGC
CTCGGCGTTTCCGGGTCCGAGGTCATCATCGATGGTGACAACCTGGTCATCACGGTGCCCGGAAACGACGGCAGTGAGGC
GCGGAACCTGGGCCAGACCGCCAAGCTCTACATTCGGCCCGTTGTGCAGGCGGTTCCGGCGCAGCCCAAGGAGAACCCGG
AGCCCGGAGCGGGCGCTCCTCAGCAGGGACAGCCGGCCCCCGCCAAGGAGGCGACGCCTCCTGCGCCGGGCGCGGGTAAG
TCCACTCCTGCCGCGCCGCCCTCACCGAAACCGCAGCCGCGGCCGTACCCCGCGCAAACCACGACGCCACCGCCACCGCC
ACCGGCGACGCAGCCCGCGACACCCAACGCCACGACGGCTCCCGCGCCTCCGGCCGACCTGCCGCCGAAGCCGGGTAGCG
GCGAGGAGCGCAAACAGCTGATCGACTTTGAGAAGCAGATCAGGCAGAGCGAGGACCCGCGGATCCAGATGCTGGCCCTG
CAAGTTCAGGCCTCGCGCTGCTATGACCCCGACGACCCGCTGGCCGGTAACGACGACCCGAACCTGCCCCTGGTCACCTG
CGGCGACGACAGCCAGGGCGGAAAGGCCGCCTACCTGCTGGACAAGTCGATCATCAGTGGCGAAGAGATCAAGGACGCCA
GCTCCGGTCTGGATCAGCAGCGCGGCATCTATGTCGTGAGCATGGAATTCAAGCCCACCGGCGCCAAGGTGTGGGCGGAC
TACACCTCCGCGCACTGGCAGCAGGGCACCCAGACCGCCTTCACGCTGGACTCCAAGGTGATCAGCGCGCCGGCGATCCG
TGAGCCCATTCCCGGTGGCAAGACCGAGATCAGTGGGCAGTTCACGTCCGACTCGGCCAAGCAACTCGCGGCGGCACTCA
AGTACGGGTCGCTGCCGCTCTCGTTCGAGTCTTCCGATGCCCAAACCGTGTCGGCGACACTCGGTTTGACCTCGCTCAAG
GCGGGCTTGATCGCCGGCGCCATCGGCTTGGCGATCGTGTTGTTGTACTCGCTGATCTACTACCGGGTGCTGGGCCTGCT
CACGGCGCTGTCCCTGGTGGCCTCCGGCGCCATGGTCTTCGCGATCCTGGTGCTGCTGGGCAGATACATCTCGTACACCC
TCGATCTCGCGGGTATCGCCGGCCTGATCATCGGCATCGGTACCACCGCCGACTCGTTCGTGGTGTTCTTCGAGCGCATC
AAAGACGAAATACGAGAGGGTCGTTCCTACCGGTCGGCGGTGCCGCGCGGTTGGGCACGCGCGCGCAAGACGATCCTGTC
CGGTAACGCGGTGACCCTGTTGGCCGCGGTGGTGCTCTACATCCTGGCCATCGGCCAGGTGAAGGGCTTCGCGTTCACCC
TTGGTCTCACCACCATTCTCGATGTCGTGGTGGTCTTCCTGGTGACGTGGCCGCTGGTCTACCTGTCCTCCAAGTCGGCG
ACCCTGTCCAAGCCCGCGTACAACGGGCTCGGCGCGGTCCAGCAGATTGCCCGCGAACGTAAGGCGGCAGCACACGCATG
A

Upstream 100 bases:

>100_bases
GCAGCGGGGTTGAGCTGACCAAGGAGTAGCGGCTTTCGCCTTTGCTCACATCCCCCGAAAGCCTCCCGACCCGCCCTCGA
CAAGCAAGGAGACCGGACAC

Downstream 100 bases:

>100_bases
GTACGAGCAATGGCACAGTGAGCAACGGCAACGGCACCGACAAGGACGTCGCGGAAGACGCCACGGACGCCACCGCAAGC
ACCGCGCAGGAGCCCAAATC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 586; Mature: 585

Protein sequence:

>586_residues
MASSSAPVHPMRYLAAFLVLLIGAYLLVFLTGDKQPKPKLGIDLQGGTRVTLTARTPDGSKPTKEALTQAQQIINARVNG
LGVSGSEVIIDGDNLVITVPGNDGSEARNLGQTAKLYIRPVVQAVPAQPKENPEPGAGAPQQGQPAPAKEATPPAPGAGK
STPAAPPSPKPQPRPYPAQTTTPPPPPPATQPATPNATTAPAPPADLPPKPGSGEERKQLIDFEKQIRQSEDPRIQMLAL
QVQASRCYDPDDPLAGNDDPNLPLVTCGDDSQGGKAAYLLDKSIISGEEIKDASSGLDQQRGIYVVSMEFKPTGAKVWAD
YTSAHWQQGTQTAFTLDSKVISAPAIREPIPGGKTEISGQFTSDSAKQLAAALKYGSLPLSFESSDAQTVSATLGLTSLK
AGLIAGAIGLAIVLLYSLIYYRVLGLLTALSLVASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIGTTADSFVVFFERI
KDEIREGRSYRSAVPRGWARARKTILSGNAVTLLAAVVLYILAIGQVKGFAFTLGLTTILDVVVVFLVTWPLVYLSSKSA
TLSKPAYNGLGAVQQIARERKAAAHA

Sequences:

>Translated_586_residues
MASSSAPVHPMRYLAAFLVLLIGAYLLVFLTGDKQPKPKLGIDLQGGTRVTLTARTPDGSKPTKEALTQAQQIINARVNG
LGVSGSEVIIDGDNLVITVPGNDGSEARNLGQTAKLYIRPVVQAVPAQPKENPEPGAGAPQQGQPAPAKEATPPAPGAGK
STPAAPPSPKPQPRPYPAQTTTPPPPPPATQPATPNATTAPAPPADLPPKPGSGEERKQLIDFEKQIRQSEDPRIQMLAL
QVQASRCYDPDDPLAGNDDPNLPLVTCGDDSQGGKAAYLLDKSIISGEEIKDASSGLDQQRGIYVVSMEFKPTGAKVWAD
YTSAHWQQGTQTAFTLDSKVISAPAIREPIPGGKTEISGQFTSDSAKQLAAALKYGSLPLSFESSDAQTVSATLGLTSLK
AGLIAGAIGLAIVLLYSLIYYRVLGLLTALSLVASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIGTTADSFVVFFERI
KDEIREGRSYRSAVPRGWARARKTILSGNAVTLLAAVVLYILAIGQVKGFAFTLGLTTILDVVVVFLVTWPLVYLSSKSA
TLSKPAYNGLGAVQQIARERKAAAHA
>Mature_585_residues
ASSSAPVHPMRYLAAFLVLLIGAYLLVFLTGDKQPKPKLGIDLQGGTRVTLTARTPDGSKPTKEALTQAQQIINARVNGL
GVSGSEVIIDGDNLVITVPGNDGSEARNLGQTAKLYIRPVVQAVPAQPKENPEPGAGAPQQGQPAPAKEATPPAPGAGKS
TPAAPPSPKPQPRPYPAQTTTPPPPPPATQPATPNATTAPAPPADLPPKPGSGEERKQLIDFEKQIRQSEDPRIQMLALQ
VQASRCYDPDDPLAGNDDPNLPLVTCGDDSQGGKAAYLLDKSIISGEEIKDASSGLDQQRGIYVVSMEFKPTGAKVWADY
TSAHWQQGTQTAFTLDSKVISAPAIREPIPGGKTEISGQFTSDSAKQLAAALKYGSLPLSFESSDAQTVSATLGLTSLKA
GLIAGAIGLAIVLLYSLIYYRVLGLLTALSLVASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIGTTADSFVVFFERIK
DEIREGRSYRSAVPRGWARARKTILSGNAVTLLAAVVLYILAIGQVKGFAFTLGLTTILDVVVVFLVTWPLVYLSSKSAT
LSKPAYNGLGAVQQIARERKAAAHA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=283, Percent_Identity=27.208480565371, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 61477; Mature: 61346

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSSAPVHPMRYLAAFLVLLIGAYLLVFLTGDKQPKPKLGIDLQGGTRVTLTARTPDGS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEECCCCC
KPTKEALTQAQQIINARVNGLGVSGSEVIIDGDNLVITVPGNDGSEARNLGQTAKLYIRP
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCHHHHHCCHHHHHHHHH
VVQAVPAQPKENPEPGAGAPQQGQPAPAKEATPPAPGAGKSTPAAPPSPKPQPRPYPAQT
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTPPPPPPATQPATPNATTAPAPPADLPPKPGSGEERKQLIDFEKQIRQSEDPRIQMLAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
QVQASRCYDPDDPLAGNDDPNLPLVTCGDDSQGGKAAYLLDKSIISGEEIKDASSGLDQQ
EEHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECHHHCCCHHHHHHHCCCCHH
RGIYVVSMEFKPTGAKVWADYTSAHWQQGTQTAFTLDSKVISAPAIREPIPGGKTEISGQ
CCEEEEEEEECCCCCCEEEHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCCCCCEECCC
FTSDSAKQLAAALKYGSLPLSFESSDAQTVSATLGLTSLKAGLIAGAIGLAIVLLYSLIY
CCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRVLGLLTALSLVASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIGTTADSFVVFFERI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KDEIREGRSYRSAVPRGWARARKTILSGNAVTLLAAVVLYILAIGQVKGFAFTLGLTTIL
HHHHHHCHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
DVVVVFLVTWPLVYLSSKSATLSKPAYNGLGAVQQIARERKAAAHA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASSSAPVHPMRYLAAFLVLLIGAYLLVFLTGDKQPKPKLGIDLQGGTRVTLTARTPDGS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEECCCCC
KPTKEALTQAQQIINARVNGLGVSGSEVIIDGDNLVITVPGNDGSEARNLGQTAKLYIRP
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCHHHHHCCHHHHHHHHH
VVQAVPAQPKENPEPGAGAPQQGQPAPAKEATPPAPGAGKSTPAAPPSPKPQPRPYPAQT
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTPPPPPPATQPATPNATTAPAPPADLPPKPGSGEERKQLIDFEKQIRQSEDPRIQMLAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
QVQASRCYDPDDPLAGNDDPNLPLVTCGDDSQGGKAAYLLDKSIISGEEIKDASSGLDQQ
EEHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECHHHCCCHHHHHHHCCCCHH
RGIYVVSMEFKPTGAKVWADYTSAHWQQGTQTAFTLDSKVISAPAIREPIPGGKTEISGQ
CCEEEEEEEECCCCCCEEEHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCCCCCEECCC
FTSDSAKQLAAALKYGSLPLSFESSDAQTVSATLGLTSLKAGLIAGAIGLAIVLLYSLIY
CCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRVLGLLTALSLVASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIGTTADSFVVFFERI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KDEIREGRSYRSAVPRGWARARKTILSGNAVTLLAAVVLYILAIGQVKGFAFTLGLTTIL
HHHHHHCHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
DVVVVFLVTWPLVYLSSKSATLSKPAYNGLGAVQQIARERKAAAHA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]