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The map label for this gene is secF [H]

Identifier: 169629963

GI number: 169629963

Start: 2933453

End: 2934727

Strand: Reverse

Name: secF [H]

Synonym: MAB_2879c

Alternate gene names: 169629963

Gene position: 2934727-2933453 (Counterclockwise)

Preceding gene: 169629964

Following gene: 169629962

Centisome position: 57.92

GC content: 63.61

Gene sequence:

>1275_bases
ATGAGTACGAGCAATGGCACAGTGAGCAACGGCAACGGCACCGACAAGGACGTCGCGGAAGACGCCACGGACGCCACCGC
AAGCACCGCGCAGGAGCCCAAATCCACGGCGGTTGAGACCGTTAGCGCCGCACCGGAACACGGATTCCTCTACCGCCTGT
ACACCGGTACTGGCGCTGTCGACGTCGTCGGGAAACGCACGCTGTGGTTCGGGATCAGCGGTGCGTTCATGGTGGTCGCG
ATTTTGTCGATCGCGATCAAGGGTTTCGTCTTCGGCATCGACTTCGAGGGCGGTACCAAGGTGTGGTTCCCCAAGGGGGA
CGCCACCGTCCAGCAGACCGAGGATGTCTTCAGCCAGACCCTGGGACACGACGCCGAATCGATCGTGGTGACCGGCACCG
GCGACTCGGCCTCCATTCAGATCCGCACCGAGAAGCTGGACAACGAGCAATCCTCGAAGCTGCACAAGGCGCTCTTCGAC
AGATTCGCGCCGAAGGGCCCGGACGGCAAGCCGTCCATCGACGCCATCAGCGACTCGGATGTCTCCGAAACCTGGGGCAG
CCAGATCACCAACAAGGCGCTCTGGGCGCTGGGCGTGTTCCTGGTGCTGGCCGGCATCTATATCGCCGTGCGTTACGAGC
GCTACATGTCGCTGGCCGCGCTGGCCGCGCTGGTTTTCGACCTGCTGGTCACCGCGGGTGTGTACTCCCTGGTGGGCTTC
GAGGTCACCCCGGCGACCGTGATCGGTCTGCTCACGATTCTCGGATTCTCCTTGTACGACACGGTGATCGTGTTCGACAA
GGTGGAAGAGAACACCCATGGCTTCCAGCACACCTCGCGGCGCACGTATGCCGAACATGCCAACTTGGCCGTGAACCAGA
CGTTCATGCGTTCCATCAACACCAGCCTCATCTCGGCCATCCCGGTGCTCTCGCTCATCGTGGTCGCCATCTGGCTATTG
GGCGTGGGCACCCTGAAGGATCTGGCGCTGGTGCAGCTGGTCGGCATCTTGGTGGGCACCTATTCGTCGATCTTCTTCGC
CACCCCGCTGTTGGTGGCGTTGCGTGAGCGCACGGATCTGGTTGCCAGCCACACCAAGAAGGTGCTGAGCCGTCGCAAGC
CCGATGCCGCACCGCTGGCAGACGCGGGTGTGGGAAGCAAGACGGCCAAGGTCGCGACATCGGGGACATCCGATGCCGCG
GCGACCGGAGTGCGCCCCGCCAAACCCAAGCCCGGCGCCCGCCCTCAAGGTAAGCGAAACACGCGGCGGCACTGA

Upstream 100 bases:

>100_bases
TCTACCTGTCCTCCAAGTCGGCGACCCTGTCCAAGCCCGCGTACAACGGGCTCGGCGCGGTCCAGCAGATTGCCCGCGAA
CGTAAGGCGGCAGCACACGC

Downstream 100 bases:

>100_bases
TGGATTCACGAAGTCCAGCACGGACCGGGGCAAGACGAATCGCGCGAATCGGCGCCATTGTGACCACGGTGCTGCTCGCG
GCGGGGCTGTTGACCTCGTG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MSTSNGTVSNGNGTDKDVAEDATDATASTAQEPKSTAVETVSAAPEHGFLYRLYTGTGAVDVVGKRTLWFGISGAFMVVA
ILSIAIKGFVFGIDFEGGTKVWFPKGDATVQQTEDVFSQTLGHDAESIVVTGTGDSASIQIRTEKLDNEQSSKLHKALFD
RFAPKGPDGKPSIDAISDSDVSETWGSQITNKALWALGVFLVLAGIYIAVRYERYMSLAALAALVFDLLVTAGVYSLVGF
EVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTSRRTYAEHANLAVNQTFMRSINTSLISAIPVLSLIVVAIWLL
GVGTLKDLALVQLVGILVGTYSSIFFATPLLVALRERTDLVASHTKKVLSRRKPDAAPLADAGVGSKTAKVATSGTSDAA
ATGVRPAKPKPGARPQGKRNTRRH

Sequences:

>Translated_424_residues
MSTSNGTVSNGNGTDKDVAEDATDATASTAQEPKSTAVETVSAAPEHGFLYRLYTGTGAVDVVGKRTLWFGISGAFMVVA
ILSIAIKGFVFGIDFEGGTKVWFPKGDATVQQTEDVFSQTLGHDAESIVVTGTGDSASIQIRTEKLDNEQSSKLHKALFD
RFAPKGPDGKPSIDAISDSDVSETWGSQITNKALWALGVFLVLAGIYIAVRYERYMSLAALAALVFDLLVTAGVYSLVGF
EVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTSRRTYAEHANLAVNQTFMRSINTSLISAIPVLSLIVVAIWLL
GVGTLKDLALVQLVGILVGTYSSIFFATPLLVALRERTDLVASHTKKVLSRRKPDAAPLADAGVGSKTAKVATSGTSDAA
ATGVRPAKPKPGARPQGKRNTRRH
>Mature_423_residues
STSNGTVSNGNGTDKDVAEDATDATASTAQEPKSTAVETVSAAPEHGFLYRLYTGTGAVDVVGKRTLWFGISGAFMVVAI
LSIAIKGFVFGIDFEGGTKVWFPKGDATVQQTEDVFSQTLGHDAESIVVTGTGDSASIQIRTEKLDNEQSSKLHKALFDR
FAPKGPDGKPSIDAISDSDVSETWGSQITNKALWALGVFLVLAGIYIAVRYERYMSLAALAALVFDLLVTAGVYSLVGFE
VTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTSRRTYAEHANLAVNQTFMRSINTSLISAIPVLSLIVVAIWLLG
VGTLKDLALVQLVGILVGTYSSIFFATPLLVALRERTDLVASHTKKVLSRRKPDAAPLADAGVGSKTAKVATSGTSDAAA
TGVRPAKPKPGARPQGKRNTRRH

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=302, Percent_Identity=26.4900662251656, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 45010; Mature: 44878

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSNGTVSNGNGTDKDVAEDATDATASTAQEPKSTAVETVSAAPEHGFLYRLYTGTGAV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCE
DVVGKRTLWFGISGAFMVVAILSIAIKGFVFGIDFEGGTKVWFPKGDATVQQTEDVFSQT
EECCCEEEEEECCHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCHHHHHHHHHHHH
LGHDAESIVVTGTGDSASIQIRTEKLDNEQSSKLHKALFDRFAPKGPDGKPSIDAISDSD
HCCCCCEEEEEECCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VSETWGSQITNKALWALGVFLVLAGIYIAVRYERYMSLAALAALVFDLLVTAGVYSLVGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTSRRTYAEHANLAVNQTFMRSIN
CCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
TSLISAIPVLSLIVVAIWLLGVGTLKDLALVQLVGILVGTYSSIFFATPLLVALRERTDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VASHTKKVLSRRKPDAAPLADAGVGSKTAKVATSGTSDAAATGVRPAKPKPGARPQGKRN
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCC
TRRH
CCCC
>Mature Secondary Structure 
STSNGTVSNGNGTDKDVAEDATDATASTAQEPKSTAVETVSAAPEHGFLYRLYTGTGAV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCE
DVVGKRTLWFGISGAFMVVAILSIAIKGFVFGIDFEGGTKVWFPKGDATVQQTEDVFSQT
EECCCEEEEEECCHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCHHHHHHHHHHHH
LGHDAESIVVTGTGDSASIQIRTEKLDNEQSSKLHKALFDRFAPKGPDGKPSIDAISDSD
HCCCCCEEEEEECCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VSETWGSQITNKALWALGVFLVLAGIYIAVRYERYMSLAALAALVFDLLVTAGVYSLVGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTSRRTYAEHANLAVNQTFMRSIN
CCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
TSLISAIPVLSLIVVAIWLLGVGTLKDLALVQLVGILVGTYSSIFFATPLLVALRERTDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VASHTKKVLSRRKPDAAPLADAGVGSKTAKVATSGTSDAAATGVRPAKPKPGARPQGKRN
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCC
TRRH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]