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The map label for this gene is cydB [H]

Identifier: 169629716

GI number: 169629716

Start: 2671520

End: 2672548

Strand: Direct

Name: cydB [H]

Synonym: MAB_2631

Alternate gene names: 169629716

Gene position: 2671520-2672548 (Clockwise)

Preceding gene: 169629715

Following gene: 169629717

Centisome position: 52.72

GC content: 62.78

Gene sequence:

>1029_bases
ATGAATCCGACTGCATTGCAACAGTTCTGGTTCGTCGTCGTGGCGGTACTATTCCTCGGCTTCCTGGTACTGGAAGGCTT
CGACTTCGGCGTCGGCATGCTCATGCATCCGCTCGGCCGCGGTGACGACCGTCGGCGGCGGGCCGTCCTCAACACGATCG
GTCCGGTATGGGACGGCAATGAGGTCTGGCTGATCACCGCCGGGGGCGCCATGTTCGCCGCGTTCCCACATTGGTATGCG
ACCGTGTTCTCCGGGCTCTACCTCCCACTGCTGTTGATTCTGGTGTCCATGATCGTCCGGATCGTCGCCATCGAATGGCG
TGGAAAAATCGACGACCCACGTTGGCGCGCCCGGTGCGATCTCGGGATCGCGATCGGCTCCTGGATACCTGCATTGCTGT
GGGGTGTGGCGTTCTCGTCGCTGCTTGCCGGACTCCCGGTGGACGGTGCCAAACAGCTCACGCTGACAGTGGGTGATGTC
CTCAGACCGTATGTCCTGCTGGGCGGTGTGGTTTTCGTGGGGCTCTTCGCCCTTCACGGTGCCCTGTTCATTTGCCTGAA
AACCTCCGGAGTGGTCCGCGACGACGCGGTCGCATGGGCACGCAAACTCGCGGCGCCGGTGATCGTCGGCGCCGGCGGCT
ACGGATTGTGGACGCAGCTGGCCTATGGCGCGAGCTGGACATGGATCGCCCTCGGCACCGCCGCGCTGTCCTTGGTGGCG
GCGGCGCTGGCTTCACGCATTTCTCGGGATGGCTGGGCCTTCGCCTGTACATGCCTGACCGTTGTCGCGGTGGTGGCGTT
GCTCTTCGGCTCGCTGTACCCGAATCTCATTGTGTCCAACCTTGATCCGGCCTACAACTTGACGATCGTCAACGCGTCTT
CCAGTCCCTATACGCTCAAGGTGATGAGTTGGGCGGCGGCCATTACCGCGCCGGTCGTACTCGTCTATCAGGGTTGGACG
TATTGGGTATTCCGTCAGCGCATCTCGGCCGAGCAGATTCCCGATCCGGTCGGGCTGACCGTGCGATGA

Upstream 100 bases:

>100_bases
CACGACGCTGAACCGAGCCCGCCCGCTTCCGACGACGACAGCGTCAAACCGCTGTCCTTCGCCTACTGACCCGACCAGCT
ACGTAAGGAGGTTCTTCGGC

Downstream 100 bases:

>100_bases
CGAGGCCGCGCGGCGCTCCGGTCGATCCCCGGCTCTGGCGTCGCAGCGCGCCCGCCCGCCGGTACCTGTTCTTGACGGTG
CTGTGCGAGCTGGTGATGAC

Product: cytochrome D ubiquinol oxydase CydB

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MNPTALQQFWFVVVAVLFLGFLVLEGFDFGVGMLMHPLGRGDDRRRRAVLNTIGPVWDGNEVWLITAGGAMFAAFPHWYA
TVFSGLYLPLLLILVSMIVRIVAIEWRGKIDDPRWRARCDLGIAIGSWIPALLWGVAFSSLLAGLPVDGAKQLTLTVGDV
LRPYVLLGGVVFVGLFALHGALFICLKTSGVVRDDAVAWARKLAAPVIVGAGGYGLWTQLAYGASWTWIALGTAALSLVA
AALASRISRDGWAFACTCLTVVAVVALLFGSLYPNLIVSNLDPAYNLTIVNASSSPYTLKVMSWAAAITAPVVLVYQGWT
YWVFRQRISAEQIPDPVGLTVR

Sequences:

>Translated_342_residues
MNPTALQQFWFVVVAVLFLGFLVLEGFDFGVGMLMHPLGRGDDRRRRAVLNTIGPVWDGNEVWLITAGGAMFAAFPHWYA
TVFSGLYLPLLLILVSMIVRIVAIEWRGKIDDPRWRARCDLGIAIGSWIPALLWGVAFSSLLAGLPVDGAKQLTLTVGDV
LRPYVLLGGVVFVGLFALHGALFICLKTSGVVRDDAVAWARKLAAPVIVGAGGYGLWTQLAYGASWTWIALGTAALSLVA
AALASRISRDGWAFACTCLTVVAVVALLFGSLYPNLIVSNLDPAYNLTIVNASSSPYTLKVMSWAAAITAPVVLVYQGWT
YWVFRQRISAEQIPDPVGLTVR
>Mature_342_residues
MNPTALQQFWFVVVAVLFLGFLVLEGFDFGVGMLMHPLGRGDDRRRRAVLNTIGPVWDGNEVWLITAGGAMFAAFPHWYA
TVFSGLYLPLLLILVSMIVRIVAIEWRGKIDDPRWRARCDLGIAIGSWIPALLWGVAFSSLLAGLPVDGAKQLTLTVGDV
LRPYVLLGGVVFVGLFALHGALFICLKTSGVVRDDAVAWARKLAAPVIVGAGGYGLWTQLAYGASWTWIALGTAALSLVA
AALASRISRDGWAFACTCLTVVAVVALLFGSLYPNLIVSNLDPAYNLTIVNASSSPYTLKVMSWAAAITAPVVLVYQGWT
YWVFRQRISAEQIPDPVGLTVR

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=369, Percent_Identity=36.5853658536585, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI1787213, Length=369, Percent_Identity=32.7913279132791, Blast_Score=181, Evalue=9e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36997; Mature: 36997

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTALQQFWFVVVAVLFLGFLVLEGFDFGVGMLMHPLGRGDDRRRRAVLNTIGPVWDGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
EVWLITAGGAMFAAFPHWYATVFSGLYLPLLLILVSMIVRIVAIEWRGKIDDPRWRARCD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
LGIAIGSWIPALLWGVAFSSLLAGLPVDGAKQLTLTVGDVLRPYVLLGGVVFVGLFALHG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
ALFICLKTSGVVRDDAVAWARKLAAPVIVGAGGYGLWTQLAYGASWTWIALGTAALSLVA
HHEEEEECCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
AALASRISRDGWAFACTCLTVVAVVALLFGSLYPNLIVSNLDPAYNLTIVNASSSPYTLK
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEH
VMSWAAAITAPVVLVYQGWTYWVFRQRISAEQIPDPVGLTVR
HHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNPTALQQFWFVVVAVLFLGFLVLEGFDFGVGMLMHPLGRGDDRRRRAVLNTIGPVWDGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
EVWLITAGGAMFAAFPHWYATVFSGLYLPLLLILVSMIVRIVAIEWRGKIDDPRWRARCD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
LGIAIGSWIPALLWGVAFSSLLAGLPVDGAKQLTLTVGDVLRPYVLLGGVVFVGLFALHG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
ALFICLKTSGVVRDDAVAWARKLAAPVIVGAGGYGLWTQLAYGASWTWIALGTAALSLVA
HHEEEEECCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
AALASRISRDGWAFACTCLTVVAVVALLFGSLYPNLIVSNLDPAYNLTIVNASSSPYTLK
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEH
VMSWAAAITAPVVLVYQGWTYWVFRQRISAEQIPDPVGLTVR
HHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]