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The map label for this gene is cydA [H]

Identifier: 169629715

GI number: 169629715

Start: 2670034

End: 2671488

Strand: Direct

Name: cydA [H]

Synonym: MAB_2630

Alternate gene names: 169629715

Gene position: 2670034-2671488 (Clockwise)

Preceding gene: 169629714

Following gene: 169629716

Centisome position: 52.69

GC content: 61.86

Gene sequence:

>1455_bases
ATGAACGCCCTGGACGTATCCCGATGGCAGTTCGGTATCACCACCGTGTACCACTTCATCTTGGTGCCGTTGACCATTGG
GCTCGCACCCCTGATCGCCATCATGCAGACGGCCTGGGTGGTGACCGGGAACAACTCGTGGTATCGACTGACCAAGTTCT
TCGGCAAGCTATTTCTCATCAACTTCGCGTTGGGCGTAGCCACCGGAATCGTCCAGGAATTCCAATTCGGCATGAACTGG
AGCGAGTACTCACGATTTGTCGGTGATGTCTTCGGCGCTCCCCTGGCGCTGGAAGGCCTGGTGGCGTTCTTCCTCGAGTC
GACCTTTCTGGGCTTGTGGATATTTGGATGGACTCGCCTGCCCAAACTGGTTCATCTGGCCTGTATCTGGATGGTGGCCA
TCGGGGTCAACGCGTCGGCCTTCTTCATCATCGCCGCCAACTCCTTCATGCAGCACCCCGTTGGTGCCGTCTACAACCCC
GAGACCGGCCGTGCGGAGCTGACAAGCATCACCGAGCTGCTCACCAATAACACGGCATTGGCCGCGTTCCCGCACACCGT
TGCCGGGTCGCTCCTGACGGCAGGCACCTTCATCGCCGGCATCTGCGGCTGGTGGATGGTGCGCTCACACAAAGTGGGCA
CGCTGGACGATGCCCGCACGATGTACCGGCCGGCCGCCATCGGTGCGTGCGCGGTGATGATCTTGTCCGGGGTCGCGTTG
GCGGCCACCGGAGACGTTCAGGGCAAGTTGATGTTCCAGCAGCAGCCCATGAAGATGGCCTCCGCCGAATCTCTCTGTTA
CACCGAGAAAGACCCTAAGTTTTCAGTGCTGACGGTGGGCACGCACAACAACTGCGCCAGTGTCACGCACGCCATCTCGC
TGCCCTATGTCCTGCCGTTCCTCGCCGAAGGCAAGTTCACCGACGTCACCCTCAAGGGCGTAGAGGACCTGCAAAAGGAA
TACGAGCAGAAGTTCGGTCCGCGTAACTATCGGCCCAATCTGTTTGTGACGTACTGGTCCTTCCGGGCGATGATCGGGCT
CGCTGCCGGGTCGGCGCTGTTGGCGCTGGCCGGACTGTGGGTCACGCGCCGCGGGCGGATACCCGGCCAGCGCTGGTTCG
CGTGGCTTTCCATCCTGGCCATTCCGACACCATTCCTGGCGAACAGCGCCGGCTGGGTGTTCACCGAGATGGGCCGACAG
CCCTGGGTGGTCGCGCCCAATCCGACAGGTGTGGACCAGATCCGGCTCACGGTGGACATGGCTGTCTCGCACCACTCCGC
CGCGACGGTCTGGCTGTCATTGATCACCTTCACGCTGCTGTATGGGGCACTCGGTGTGGTGTGGTTCTGGCTCATCCGCC
GCTACACCATCGAAGGCCCGCTCGAGCACGACGCTGAACCGAGCCCGCCCGCTTCCGACGACGACAGCGTCAAACCGCTG
TCCTTCGCCTACTGA

Upstream 100 bases:

>100_bases
ACCGTCCCGTGTTCGACTCCTTGGCGTATTAGTAAATGTGGCCCGTATCGCGTTGATCTTGTACTGCAACTACTACTACG
CTGCGTCGTAGGAGGTGGCG

Downstream 100 bases:

>100_bases
CCCGACCAGCTACGTAAGGAGGTTCTTCGGCATGAATCCGACTGCATTGCAACAGTTCTGGTTCGTCGTCGTGGCGGTAC
TATTCCTCGGCTTCCTGGTA

Product: integral membrane cytochrome D ubiquinol oxidase (subunit I) CydA

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MNALDVSRWQFGITTVYHFILVPLTIGLAPLIAIMQTAWVVTGNNSWYRLTKFFGKLFLINFALGVATGIVQEFQFGMNW
SEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWTRLPKLVHLACIWMVAIGVNASAFFIIAANSFMQHPVGAVYNP
ETGRAELTSITELLTNNTALAAFPHTVAGSLLTAGTFIAGICGWWMVRSHKVGTLDDARTMYRPAAIGACAVMILSGVAL
AATGDVQGKLMFQQQPMKMASAESLCYTEKDPKFSVLTVGTHNNCASVTHAISLPYVLPFLAEGKFTDVTLKGVEDLQKE
YEQKFGPRNYRPNLFVTYWSFRAMIGLAAGSALLALAGLWVTRRGRIPGQRWFAWLSILAIPTPFLANSAGWVFTEMGRQ
PWVVAPNPTGVDQIRLTVDMAVSHHSAATVWLSLITFTLLYGALGVVWFWLIRRYTIEGPLEHDAEPSPPASDDDSVKPL
SFAY

Sequences:

>Translated_484_residues
MNALDVSRWQFGITTVYHFILVPLTIGLAPLIAIMQTAWVVTGNNSWYRLTKFFGKLFLINFALGVATGIVQEFQFGMNW
SEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWTRLPKLVHLACIWMVAIGVNASAFFIIAANSFMQHPVGAVYNP
ETGRAELTSITELLTNNTALAAFPHTVAGSLLTAGTFIAGICGWWMVRSHKVGTLDDARTMYRPAAIGACAVMILSGVAL
AATGDVQGKLMFQQQPMKMASAESLCYTEKDPKFSVLTVGTHNNCASVTHAISLPYVLPFLAEGKFTDVTLKGVEDLQKE
YEQKFGPRNYRPNLFVTYWSFRAMIGLAAGSALLALAGLWVTRRGRIPGQRWFAWLSILAIPTPFLANSAGWVFTEMGRQ
PWVVAPNPTGVDQIRLTVDMAVSHHSAATVWLSLITFTLLYGALGVVWFWLIRRYTIEGPLEHDAEPSPPASDDDSVKPL
SFAY
>Mature_484_residues
MNALDVSRWQFGITTVYHFILVPLTIGLAPLIAIMQTAWVVTGNNSWYRLTKFFGKLFLINFALGVATGIVQEFQFGMNW
SEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWTRLPKLVHLACIWMVAIGVNASAFFIIAANSFMQHPVGAVYNP
ETGRAELTSITELLTNNTALAAFPHTVAGSLLTAGTFIAGICGWWMVRSHKVGTLDDARTMYRPAAIGACAVMILSGVAL
AATGDVQGKLMFQQQPMKMASAESLCYTEKDPKFSVLTVGTHNNCASVTHAISLPYVLPFLAEGKFTDVTLKGVEDLQKE
YEQKFGPRNYRPNLFVTYWSFRAMIGLAAGSALLALAGLWVTRRGRIPGQRWFAWLSILAIPTPFLANSAGWVFTEMGRQ
PWVVAPNPTGVDQIRLTVDMAVSHHSAATVWLSLITFTLLYGALGVVWFWLIRRYTIEGPLEHDAEPSPPASDDDSVKPL
SFAY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=519, Percent_Identity=35.0674373795761, Blast_Score=284, Evalue=7e-78,
Organism=Escherichia coli, GI1787212, Length=521, Percent_Identity=35.1247600767754, Blast_Score=281, Evalue=8e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53272; Mature: 53272

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALDVSRWQFGITTVYHFILVPLTIGLAPLIAIMQTAWVVTGNNSWYRLTKFFGKLFLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHH
NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWTRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PKLVHLACIWMVAIGVNASAFFIIAANSFMQHPVGAVYNPETGRAELTSITELLTNNTAL
HHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
AAFPHTVAGSLLTAGTFIAGICGWWMVRSHKVGTLDDARTMYRPAAIGACAVMILSGVAL
EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
AATGDVQGKLMFQQQPMKMASAESLCYTEKDPKFSVLTVGTHNNCASVTHAISLPYVLPF
EECCCCCEEEEEECCCHHHHHHHHHEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
LAEGKFTDVTLKGVEDLQKEYEQKFGPRNYRPNLFVTYWSFRAMIGLAAGSALLALAGLW
HCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
VTRRGRIPGQRWFAWLSILAIPTPFLANSAGWVFTEMGRQPWVVAPNPTGVDQIRLTVDM
HEECCCCCHHHHHHHHHHHHCCCHHHCCCCCCEEECCCCCCEEECCCCCCCCCEEEEEEE
AVSHHSAATVWLSLITFTLLYGALGVVWFWLIRRYTIEGPLEHDAEPSPPASDDDSVKPL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
SFAY
CCCC
>Mature Secondary Structure
MNALDVSRWQFGITTVYHFILVPLTIGLAPLIAIMQTAWVVTGNNSWYRLTKFFGKLFLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHH
NFALGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLALEGLVAFFLESTFLGLWIFGWTRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PKLVHLACIWMVAIGVNASAFFIIAANSFMQHPVGAVYNPETGRAELTSITELLTNNTAL
HHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
AAFPHTVAGSLLTAGTFIAGICGWWMVRSHKVGTLDDARTMYRPAAIGACAVMILSGVAL
EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
AATGDVQGKLMFQQQPMKMASAESLCYTEKDPKFSVLTVGTHNNCASVTHAISLPYVLPF
EECCCCCEEEEEECCCHHHHHHHHHEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
LAEGKFTDVTLKGVEDLQKEYEQKFGPRNYRPNLFVTYWSFRAMIGLAAGSALLALAGLW
HCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
VTRRGRIPGQRWFAWLSILAIPTPFLANSAGWVFTEMGRQPWVVAPNPTGVDQIRLTVDM
HEECCCCCHHHHHHHHHHHHCCCHHHCCCCCCEEECCCCCCEEECCCCCCCCCEEEEEEE
AVSHHSAATVWLSLITFTLLYGALGVVWFWLIRRYTIEGPLEHDAEPSPPASDDDSVKPL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
SFAY
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]