Click here to switch to the map view.

The map label for this gene is ygaD [C]

Identifier: 169629529

GI number: 169629529

Start: 2499885

End: 2501147

Strand: Direct

Name: ygaD [C]

Synonym: MAB_2443

Alternate gene names: 169629529

Gene position: 2499885-2501147 (Clockwise)

Preceding gene: 169629527

Following gene: 169629531

Centisome position: 49.33

GC content: 64.21

Gene sequence:

>1263_bases
ATGTTGCGTGCGGGAATCGTCGTCACGGGTACCGAGGTCCTCACCGGGCGGGTTGCGGACGCGAACGGACCATGGCTTGC
CGAGCACCTGCGAAAGGTGGGGGTCGATGTCGCGCACCTCTGCGTGTGTGGGGACCGCAGAGAAGATCTGCTGGCGCAGC
TGAAGTTTCTCACCGATCAAGGTGTCGATTTGATCGTCACATCAGGCGGCTTGGGACCCACCGCTGACGATATGACGCTG
CCGACTGTTGCTGAATTTGCCGGAACCACACTTATTTTCGATGATGTGCTGGAGACGGCCATCATGGACCGGCTCCGGCC
GATGGCCAATCGCTGGGAGAATGTCGATTGGGAGGCGCTGCGAGTCGGCATTGCCAAACAGGCGCTGGTGCCGGCCCGCG
GACAGATATTGGACCCGGTGGGCACTGCTCCGGGTGCGATCATGAGCGCGGGAGACGTGCTTATCGTGGTGCTACCCGGA
CCACCACACGAACTGCAACGGATGTGGCAAACGGCGGTCAACGCCGCGCCGTTCCGCGCACTTGTGGGCGACGATGCCGC
GGCCATCGAAGAGACGGTGCTGCGGTTGTACGGAATCACCGAGCCGGATATCGCCGAGACACTGCGCCTCGCCGAGAATG
CACTGGGAGGCCTTGCCGCGCTGGAAATCACCACGTGTCTGCGGCGTAGTGAGGTCGAGGTGGTCACCCGGTTCGACTCG
TCCGCGCGGTCTGTCTGGCAGGGCCTCTACGAGTTCATTCGCGCCAGGCACGGCGTGGCGCTGTTCTCCTCCGATGGTTC
GACCGTCGATGAGGTGGTGGCCGCGCTGCTGCACGGACGGCGGCTTGCTGTGGCGGAGTCATGCACCGCAGGGCTTTTGG
GGGCGCGGATAGCGGATGTGCCGGGCTCTTCGGCGTACTTCCTCGGCGGTGTCATCAGCTATGCCAATGATGTCAAGGTC
GGTCAGCTGTGTGTGGACCCGGATCTGCTCGCCAGCCATGGTGCGGTATCACCGGAGGTCGCGGAGGCCATGGCCGACGG
GGCACTGAAGGCATTGGGTGCCGATATCGCGGTGTCGACCACTGGCGTAGCCGGTCCAGGAGGCGGGTCGCCGGATAAAC
CGGTGGGCACCGTGTGTTTCTGCGCCAAGACCGCGGCGGGCGAGAAGGCGGAACTACGGGTGGTTATCCCGGGAAACCGC
AACCAAATTCGCGAGCGCGCCACTACTGTCGCCCTGCACCTGCTGCGCAGGCTGCTGTCGTAG

Upstream 100 bases:

>100_bases
GTACTGAAGGTCGGGGAAGGTGGTGACGATGTATTCGATGACAGCGCCCTCGTCGATGCCCACGATCATGACACCGAACC
TACCGGCCTAGGCTGCTGAC

Downstream 100 bases:

>100_bases
CACTATTCCCCAAAGGGGGCGGCCTTGACGAGCATGGGGAAGGCCGCGTATCGGGTGAGCCACGCGGCGCGCCCGTTCGG
CACTGCGGCGCTCTCGGCAG

Product: competence damage-inducible protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MLRAGIVVTGTEVLTGRVADANGPWLAEHLRKVGVDVAHLCVCGDRREDLLAQLKFLTDQGVDLIVTSGGLGPTADDMTL
PTVAEFAGTTLIFDDVLETAIMDRLRPMANRWENVDWEALRVGIAKQALVPARGQILDPVGTAPGAIMSAGDVLIVVLPG
PPHELQRMWQTAVNAAPFRALVGDDAAAIEETVLRLYGITEPDIAETLRLAENALGGLAALEITTCLRRSEVEVVTRFDS
SARSVWQGLYEFIRARHGVALFSSDGSTVDEVVAALLHGRRLAVAESCTAGLLGARIADVPGSSAYFLGGVISYANDVKV
GQLCVDPDLLASHGAVSPEVAEAMADGALKALGADIAVSTTGVAGPGGGSPDKPVGTVCFCAKTAAGEKAELRVVIPGNR
NQIRERATTVALHLLRRLLS

Sequences:

>Translated_420_residues
MLRAGIVVTGTEVLTGRVADANGPWLAEHLRKVGVDVAHLCVCGDRREDLLAQLKFLTDQGVDLIVTSGGLGPTADDMTL
PTVAEFAGTTLIFDDVLETAIMDRLRPMANRWENVDWEALRVGIAKQALVPARGQILDPVGTAPGAIMSAGDVLIVVLPG
PPHELQRMWQTAVNAAPFRALVGDDAAAIEETVLRLYGITEPDIAETLRLAENALGGLAALEITTCLRRSEVEVVTRFDS
SARSVWQGLYEFIRARHGVALFSSDGSTVDEVVAALLHGRRLAVAESCTAGLLGARIADVPGSSAYFLGGVISYANDVKV
GQLCVDPDLLASHGAVSPEVAEAMADGALKALGADIAVSTTGVAGPGGGSPDKPVGTVCFCAKTAAGEKAELRVVIPGNR
NQIRERATTVALHLLRRLLS
>Mature_420_residues
MLRAGIVVTGTEVLTGRVADANGPWLAEHLRKVGVDVAHLCVCGDRREDLLAQLKFLTDQGVDLIVTSGGLGPTADDMTL
PTVAEFAGTTLIFDDVLETAIMDRLRPMANRWENVDWEALRVGIAKQALVPARGQILDPVGTAPGAIMSAGDVLIVVLPG
PPHELQRMWQTAVNAAPFRALVGDDAAAIEETVLRLYGITEPDIAETLRLAENALGGLAALEITTCLRRSEVEVVTRFDS
SARSVWQGLYEFIRARHGVALFSSDGSTVDEVVAALLHGRRLAVAESCTAGLLGARIADVPGSSAYFLGGVISYANDVKV
GQLCVDPDLLASHGAVSPEVAEAMADGALKALGADIAVSTTGVAGPGGGSPDKPVGTVCFCAKTAAGEKAELRVVIPGNR
NQIRERATTVALHLLRRLLS

Specific function: Unknown

COG id: COG1058

COG function: function code R; Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=138, Percent_Identity=47.8260869565217, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788583, Length=175, Percent_Identity=32, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787818, Length=121, Percent_Identity=33.0578512396694, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71993966, Length=173, Percent_Identity=30.635838150289, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71993974, Length=173, Percent_Identity=30.635838150289, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 44058; Mature: 44058

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAGIVVTGTEVLTGRVADANGPWLAEHLRKVGVDVAHLCVCGDRREDLLAQLKFLTDQ
CCCCCEEEECCHHHEEEEECCCCCHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHHCC
GVDLIVTSGGLGPTADDMTLPTVAEFAGTTLIFDDVLETAIMDRLRPMANRWENVDWEAL
CCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RVGIAKQALVPARGQILDPVGTAPGAIMSAGDVLIVVLPGPPHELQRMWQTAVNAAPFRA
HHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHH
LVGDDAAAIEETVLRLYGITEPDIAETLRLAENALGGLAALEITTCLRRSEVEVVTRFDS
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCH
SARSVWQGLYEFIRARHGVALFSSDGSTVDEVVAALLHGRRLAVAESCTAGLLGARIADV
HHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCC
PGSSAYFLGGVISYANDVKVGQLCVDPDLLASHGAVSPEVAEAMADGALKALGADIAVST
CCCCHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEE
TGVAGPGGGSPDKPVGTVCFCAKTAAGEKAELRVVIPGNRNQIRERATTVALHLLRRLLS
CCCCCCCCCCCCCCCCCEEEEEHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MLRAGIVVTGTEVLTGRVADANGPWLAEHLRKVGVDVAHLCVCGDRREDLLAQLKFLTDQ
CCCCCEEEECCHHHEEEEECCCCCHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHHCC
GVDLIVTSGGLGPTADDMTLPTVAEFAGTTLIFDDVLETAIMDRLRPMANRWENVDWEAL
CCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RVGIAKQALVPARGQILDPVGTAPGAIMSAGDVLIVVLPGPPHELQRMWQTAVNAAPFRA
HHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHH
LVGDDAAAIEETVLRLYGITEPDIAETLRLAENALGGLAALEITTCLRRSEVEVVTRFDS
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCH
SARSVWQGLYEFIRARHGVALFSSDGSTVDEVVAALLHGRRLAVAESCTAGLLGARIADV
HHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCC
PGSSAYFLGGVISYANDVKVGQLCVDPDLLASHGAVSPEVAEAMADGALKALGADIAVST
CCCCHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEE
TGVAGPGGGSPDKPVGTVCFCAKTAAGEKAELRVVIPGNRNQIRERATTVALHLLRRLLS
CCCCCCCCCCCCCCCCCEEEEEHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA