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The map label for this gene is yggS [C]

Identifier: 169629098

GI number: 169629098

Start: 2011640

End: 2012359

Strand: Direct

Name: yggS [C]

Synonym: MAB_2011

Alternate gene names: 169629098

Gene position: 2011640-2012359 (Clockwise)

Preceding gene: 169629097

Following gene: 169629099

Centisome position: 39.7

GC content: 64.31

Gene sequence:

>720_bases
ATGACGCGCGCCGAGGAATTGAGTGCGGCACTGTGCTCGGTGCGGGAGCGCGTGAGGCGGGCCGCGGAAATCGCTGGTCG
AGATCCGGGCGAGATCCAATTGCTGCCCGTCACAAAGTTTTTCCCGGCCAGTGACGTCGAGGAACTGTATCGGCTGGGCT
GTCGCGAGTTCGGGGAGTCCCGCGACCAGGAAGCGGCGGCGAAGGTGGCTCTGTTGGATCAGGCCGGGCACGCCGATATC
CGCTGGCACATGGTAGGCAACCTGCAGCGTAACAAGGCGAAATCGGTTGCGCATTGGGCGCATTCGGTGCACTCGGTGGA
CAACGCGAGGCTGGTGACGGCGTTGGACGGCGCACGCGGTGCGGGGGAGAAGCGGGAACCGCTGGGCATCTATCTTCAGG
TCAGCCTCGACGGCGACAACGCACGGGGAGGGGTGGATATCGCGGCTGCCGACGAGATTGACCAGCTGTGCGCGCAGGTG
GTTGCCAGCGAGCATCTGGAGCTTGCCGGGCTGATGGCGCTGCCGCCCCGGGAGGCCGATCCCGACCAGGCCTTTCGCCG
ACTCCAGCAAGAACATGAACGTGTCCGTGACCGTTATCCGCAGGCGAACCGTTTATCGGCGGGAATGTCCAACGACCTGG
AGGCCGCCATTAAATATGGGTCCACATGTGTGCGTGTCGGAACGGCGTTGATGGGGCAACGACCGCTAACGTCACGGTAG

Upstream 100 bases:

>100_bases
TCGATATCGACCCCAGGTGCACGGTCGAGGACCCGGATCTGTTCAGTTATCGTCGGGAGCCCCGCACGGGCCGACTGGCG
TCGGTGATCTGGCTCGGCTG

Downstream 100 bases:

>100_bases
ATCGTCACTCCAGTCACATTTGCAACACAGCTGTAGAGACCGAGCGAACAACTGAACTCCATTTAGCCCAAGCACGGAAG
GTCACGCGATGAGCACGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTRAEELSAALCSVRERVRRAAEIAGRDPGEIQLLPVTKFFPASDVEELYRLGCREFGESRDQEAAAKVALLDQAGHADI
RWHMVGNLQRNKAKSVAHWAHSVHSVDNARLVTALDGARGAGEKREPLGIYLQVSLDGDNARGGVDIAAADEIDQLCAQV
VASEHLELAGLMALPPREADPDQAFRRLQQEHERVRDRYPQANRLSAGMSNDLEAAIKYGSTCVRVGTALMGQRPLTSR

Sequences:

>Translated_239_residues
MTRAEELSAALCSVRERVRRAAEIAGRDPGEIQLLPVTKFFPASDVEELYRLGCREFGESRDQEAAAKVALLDQAGHADI
RWHMVGNLQRNKAKSVAHWAHSVHSVDNARLVTALDGARGAGEKREPLGIYLQVSLDGDNARGGVDIAAADEIDQLCAQV
VASEHLELAGLMALPPREADPDQAFRRLQQEHERVRDRYPQANRLSAGMSNDLEAAIKYGSTCVRVGTALMGQRPLTSR
>Mature_238_residues
TRAEELSAALCSVRERVRRAAEIAGRDPGEIQLLPVTKFFPASDVEELYRLGCREFGESRDQEAAAKVALLDQAGHADIR
WHMVGNLQRNKAKSVAHWAHSVHSVDNARLVTALDGARGAGEKREPLGIYLQVSLDGDNARGGVDIAAADEIDQLCAQVV
ASEHLELAGLMALPPREADPDQAFRRLQQEHERVRDRYPQANRLSAGMSNDLEAAIKYGSTCVRVGTALMGQRPLTSR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=268, Percent_Identity=30.2238805970149, Blast_Score=84, Evalue=8e-17,
Organism=Escherichia coli, GI1789321, Length=237, Percent_Identity=36.7088607594937, Blast_Score=150, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI17533025, Length=218, Percent_Identity=27.9816513761468, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6319435, Length=245, Percent_Identity=31.0204081632653, Blast_Score=105, Evalue=6e-24,
Organism=Drosophila melanogaster, GI45550861, Length=234, Percent_Identity=32.9059829059829, Blast_Score=112, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26172; Mature: 26041

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAEELSAALCSVRERVRRAAEIAGRDPGEIQLLPVTKFFPASDVEELYRLGCREFGES
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
RDQEAAAKVALLDQAGHADIRWHMVGNLQRNKAKSVAHWAHSVHSVDNARLVTALDGARG
CCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
AGEKREPLGIYLQVSLDGDNARGGVDIAAADEIDQLCAQVVASEHLELAGLMALPPREAD
CCCCCCCEEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
PDQAFRRLQQEHERVRDRYPQANRLSAGMSNDLEAAIKYGSTCVRVGTALMGQRPLTSR
HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TRAEELSAALCSVRERVRRAAEIAGRDPGEIQLLPVTKFFPASDVEELYRLGCREFGES
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
RDQEAAAKVALLDQAGHADIRWHMVGNLQRNKAKSVAHWAHSVHSVDNARLVTALDGARG
CCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
AGEKREPLGIYLQVSLDGDNARGGVDIAAADEIDQLCAQVVASEHLELAGLMALPPREAD
CCCCCCCEEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
PDQAFRRLQQEHERVRDRYPQANRLSAGMSNDLEAAIKYGSTCVRVGTALMGQRPLTSR
HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]