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The map label for this gene is ydhC [H]

Identifier: 169628795

GI number: 169628795

Start: 1732839

End: 1733519

Strand: Reverse

Name: ydhC [H]

Synonym: MAB_1705c

Alternate gene names: 169628795

Gene position: 1733519-1732839 (Counterclockwise)

Preceding gene: 169628796

Following gene: 169628794

Centisome position: 34.21

GC content: 71.66

Gene sequence:

>681_bases
ATGCCGGTACCGCCCTCGGAGGGCATCGCAGCGCGATCCCTGCTCCGCGATAACGCCTACAAGGCCCTGCGTACGGCCAT
CGTCGACGGCACACTCGCCCCCGGTGAACGCCTGCGTGACGACGAGTTGAGCCGATGGCTGGGAGTGAGCCGGACCCCGA
TCCGCGAGGCCCTGGCCCGCCTGGAGCAAGCCGGCCTGGTGCAGACCCAACCGGGTAGGCACACCATCGTCAGTCCCATC
GACGTCCGCGAGGCACGTGCCGCGCAGTCCGTCGCCGCCGCGATGCACGAGCTCGCCGTCCGGGAGGCGATCACCAACAT
CTCCCCCGGCGACCTCGCGGCGATGCGGCACGCCAACACCCGCTTCGCCGCCGCCCTGGACGCCCACGATCCCGACGCCG
CTCTGGCCGCGGACGACGAATTCCACGCCGTCGCCGTCGAAGCCAGCGCCAACCCCTACATCGCCGCCGTACTCGAACAG
GTCACCCCCGTGCTGCGCCGCCTGGAACGAATCCGCTTCGCCAGCCGCGACGGACGCCATTCGGTGGCCCTGCACGAGCA
GATCATCGCCCGGTGCGAAGCCGGTGACAGCGAGGGCGCGGGCCGCGCCGCGCGCGACAACTGGCACACCCTCATTGCGG
CGCCCGAGGGCGCCGCACACGAAGAACGCGGAGCCGGCTGA

Upstream 100 bases:

>100_bases
CGAGCTTCCGCGGCGGCGGGGGCCGCTTCTAACTGGCCGCATCCATCCGGCGCGGCCCTGGTACTTGACCTGCGCCGCCT
ACCGATGTGCAATATATTGC

Downstream 100 bases:

>100_bases
AAAACGTTGTTCCGCATCGATATCACCACACAACGCCAGGAGAGCCCGTGTCGATCCACGATTTTGCCCGCTACCCACTG
ACCTTCGGCCCCAGCCCCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPVPPSEGIAARSLLRDNAYKALRTAIVDGTLAPGERLRDDELSRWLGVSRTPIREALARLEQAGLVQTQPGRHTIVSPI
DVREARAAQSVAAAMHELAVREAITNISPGDLAAMRHANTRFAAALDAHDPDAALAADDEFHAVAVEASANPYIAAVLEQ
VTPVLRRLERIRFASRDGRHSVALHEQIIARCEAGDSEGAGRAARDNWHTLIAAPEGAAHEERGAG

Sequences:

>Translated_226_residues
MPVPPSEGIAARSLLRDNAYKALRTAIVDGTLAPGERLRDDELSRWLGVSRTPIREALARLEQAGLVQTQPGRHTIVSPI
DVREARAAQSVAAAMHELAVREAITNISPGDLAAMRHANTRFAAALDAHDPDAALAADDEFHAVAVEASANPYIAAVLEQ
VTPVLRRLERIRFASRDGRHSVALHEQIIARCEAGDSEGAGRAARDNWHTLIAAPEGAAHEERGAG
>Mature_225_residues
PVPPSEGIAARSLLRDNAYKALRTAIVDGTLAPGERLRDDELSRWLGVSRTPIREALARLEQAGLVQTQPGRHTIVSPID
VREARAAQSVAAAMHELAVREAITNISPGDLAAMRHANTRFAAALDAHDPDAALAADDEFHAVAVEASANPYIAAVLEQV
TPVLRRLERIRFASRDGRHSVALHEQIIARCEAGDSEGAGRAARDNWHTLIAAPEGAAHEERGAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=158, Percent_Identity=26.5822784810127, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24194; Mature: 24063

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVPPSEGIAARSLLRDNAYKALRTAIVDGTLAPGERLRDDELSRWLGVSRTPIREALAR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHCCCCCHHHHHHHH
LEQAGLVQTQPGRHTIVSPIDVREARAAQSVAAAMHELAVREAITNISPGDLAAMRHANT
HHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
RFAAALDAHDPDAALAADDEFHAVAVEASANPYIAAVLEQVTPVLRRLERIRFASRDGRH
HHEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SVALHEQIIARCEAGDSEGAGRAARDNWHTLIAAPEGAAHEERGAG
HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
PVPPSEGIAARSLLRDNAYKALRTAIVDGTLAPGERLRDDELSRWLGVSRTPIREALAR
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHCCCCCHHHHHHHH
LEQAGLVQTQPGRHTIVSPIDVREARAAQSVAAAMHELAVREAITNISPGDLAAMRHANT
HHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
RFAAALDAHDPDAALAADDEFHAVAVEASANPYIAAVLEQVTPVLRRLERIRFASRDGRH
HHEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SVALHEQIIARCEAGDSEGAGRAARDNWHTLIAAPEGAAHEERGAG
HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]