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The map label for this gene is rnz [C]

Identifier: 169628574

GI number: 169628574

Start: 1494214

End: 1494975

Strand: Direct

Name: rnz [C]

Synonym: MAB_1483

Alternate gene names: 169628574

Gene position: 1494214-1494975 (Clockwise)

Preceding gene: 169628573

Following gene: 169628575

Centisome position: 29.49

GC content: 65.75

Gene sequence:

>762_bases
GTGCGAGTCACCGTGCTCGGCTGCTCGGGCAGTGTCACCGGACCGGATTCACCGGCGTCTGGTTACCTCCTGACGGCACC
GGATGCGCCACCGTTGGTCATCGACTTCGGTGGCGGTGTCTTGGGCTCTCTGCAACGTTTTGCCGACCCGGGATCGGTCT
CGGTCCTGCTGTCGCACCTGCATGCCGATCACTGCCTGGACCTGCCCGGCCTGTTCGTGTGGCGCCGGTATCACCCGAAT
CCACCCAAGGGCAAGGCCATCATGTATGGGCCCGCCGACACACTGGTCCGGGTAGGCGCTGCCTCCGCCGAGATCGGGGG
TGAGGTTGACGATTTCACCGACATTTTCGACGTCTTCCCGTGGGCCGATGGCGAGCCCGTCCAGTTCGGGTCGTTGACCG
TCACACCGACTCGGGTGGCGCATCCGCCCGAGTCATACGGTCTGCGCATCGAGGATTCGTCGGGCACCGTTCTGGCCTAC
AGCGGCGATACCGGCATCTGCGACGCCGTGGTCGATCTGGCACGCGGTGCCGATGTGTTCCTGTGTGAGGCGTCATGGAC
GCACATGCCGGGGCACCGCCCGCCGGACCTGCACCTGTCGGGAACCGAGGCGGGACAGATCGCCACCCGGGCAGGCGTGA
AGGAACTGTTGCTGACCCACATCCCGCCATGGACCTCGCGTGAGGATGTCATCGCAGAGGCCAAGTCGGCCTTCGACGGA
CCGGTACATGCCGTGGTCGCCGGGGAGAACATCGACCTGTAG

Upstream 100 bases:

>100_bases
GGGCTAGCAGTGTTCCCGGTTACACCGAAATTACCCGTTCCAGTTAGACACCCCTGCGCCCCTGTGCAGAGACGCTTGCC
AGGCGTGGCAAGCTAGGGCT

Downstream 100 bases:

>100_bases
CTCCGTCACTCACGCTCGGCACCGTCGCGGAGACGATAAGGTCGAAGGCGTGTCCAGACGAGAAGACGGCAGACAAGACG
ACGAATTGCGCCCCGTGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MRVTVLGCSGSVTGPDSPASGYLLTAPDAPPLVIDFGGGVLGSLQRFADPGSVSVLLSHLHADHCLDLPGLFVWRRYHPN
PPKGKAIMYGPADTLVRVGAASAEIGGEVDDFTDIFDVFPWADGEPVQFGSLTVTPTRVAHPPESYGLRIEDSSGTVLAY
SGDTGICDAVVDLARGADVFLCEASWTHMPGHRPPDLHLSGTEAGQIATRAGVKELLLTHIPPWTSREDVIAEAKSAFDG
PVHAVVAGENIDL

Sequences:

>Translated_253_residues
MRVTVLGCSGSVTGPDSPASGYLLTAPDAPPLVIDFGGGVLGSLQRFADPGSVSVLLSHLHADHCLDLPGLFVWRRYHPN
PPKGKAIMYGPADTLVRVGAASAEIGGEVDDFTDIFDVFPWADGEPVQFGSLTVTPTRVAHPPESYGLRIEDSSGTVLAY
SGDTGICDAVVDLARGADVFLCEASWTHMPGHRPPDLHLSGTEAGQIATRAGVKELLLTHIPPWTSREDVIAEAKSAFDG
PVHAVVAGENIDL
>Mature_253_residues
MRVTVLGCSGSVTGPDSPASGYLLTAPDAPPLVIDFGGGVLGSLQRFADPGSVSVLLSHLHADHCLDLPGLFVWRRYHPN
PPKGKAIMYGPADTLVRVGAASAEIGGEVDDFTDIFDVFPWADGEPVQFGSLTVTPTRVAHPPESYGLRIEDSSGTVLAY
SGDTGICDAVVDLARGADVFLCEASWTHMPGHRPPDLHLSGTEAGQIATRAGVKELLLTHIPPWTSREDVIAEAKSAFDG
PVHAVVAGENIDL

Specific function: Zinc Phosphodiesterase, Which Displays Some Trna 3'- Processing Endonuclease Activity. Probably Involved In Trna Maturation, By Removing A 3'Trailer From Precursor Trna. [C]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the atsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: 3.1.26.11 [C]

Molecular weight: Translated: 26583; Mature: 26583

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVTVLGCSGSVTGPDSPASGYLLTAPDAPPLVIDFGGGVLGSLQRFADPGSVSVLLSHL
CEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHH
HADHCLDLPGLFVWRRYHPNPPKGKAIMYGPADTLVRVGAASAEIGGEVDDFTDIFDVFP
HHHHHCCCCCCEEEEEECCCCCCCCEEEECCHHHHHEECCCCHHCCCCCHHHHHHHHHCC
WADGEPVQFGSLTVTPTRVAHPPESYGLRIEDSSGTVLAYSGDTGICDAVVDLARGADVF
CCCCCCEEECCEEECCCCCCCCCHHHCEEEECCCCEEEEECCCCCHHHHHHHHHCCCCEE
LCEASWTHMPGHRPPDLHLSGTEAGQIATRAGVKELLLTHIPPWTSREDVIAEAKSAFDG
EEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
PVHAVVAGENIDL
CEEEEEECCCCCC
>Mature Secondary Structure
MRVTVLGCSGSVTGPDSPASGYLLTAPDAPPLVIDFGGGVLGSLQRFADPGSVSVLLSHL
CEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHH
HADHCLDLPGLFVWRRYHPNPPKGKAIMYGPADTLVRVGAASAEIGGEVDDFTDIFDVFP
HHHHHCCCCCCEEEEEECCCCCCCCEEEECCHHHHHEECCCCHHCCCCCHHHHHHHHHCC
WADGEPVQFGSLTVTPTRVAHPPESYGLRIEDSSGTVLAYSGDTGICDAVVDLARGADVF
CCCCCCEEECCEEECCCCCCCCCHHHCEEEECCCCEEEEECCCCCHHHHHHHHHCCCCEE
LCEASWTHMPGHRPPDLHLSGTEAGQIATRAGVKELLLTHIPPWTSREDVIAEAKSAFDG
EEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
PVHAVVAGENIDL
CEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]