Click here to switch to the map view.

The map label for this gene is soxC [H]

Identifier: 169628513

GI number: 169628513

Start: 1426158

End: 1427375

Strand: Reverse

Name: soxC [H]

Synonym: MAB_1422c

Alternate gene names: 169628513

Gene position: 1427375-1426158 (Counterclockwise)

Preceding gene: 169628515

Following gene: 169628510

Centisome position: 28.17

GC content: 64.04

Gene sequence:

>1218_bases
ATGACTTCCGCTCCGTCAGTCCTGGAAATCCGCGCGCTGCCCGGCACCGACACCTACCGGAATCTGCTCGCCCAAGTCGC
CGAGGGAGCACGGGACCGTGATCTGGACGACGAGAATCCCTTTGATCAAGTCCGGCTGCTCAAGGAGGCGGGATTCGGCC
GGTTGCGCATCCCCACCGAACTGGGCGGCGCGGGACTTTCTGTGCGACAGCTCTTTTCCGCCATCATCGATGTCGCTCAA
GCCGACCCTATCGTGGCACACATCTTCCGCACCCACTTCTGGTTTGTCGAGGAACGGCTGCGCACCCTCGCCGACCCCGT
GTCGGCGGCCTGGCTTACCAAGGTGAACGAGGGCAATCTATTCGCGAACGCGTTCAGCGAGAAAGGCTCCCTGGCCGTGG
GCAGCCTGGTATTCAACACGCGGCTGCTGCCGGTGGGCGACGCGTATCGGTTGAACGGCGAGAAGTTCTACAGCACCGGA
ACATTGTTCGCGGACTACCTCACCGTCACCGCGACCACCGACCGCGACTCAGTGGCCTCGGTGATCGTCCCCGGCGATCG
TGACGGCGTGCGCCTGGTCGACGACTGGGACGGCTTCGGCCAACGACGCACCGGTACCGGCACCACGATCTTCAGCCAGG
TCGACGTCGCCGCCGATGAGATCCTCTCCGAAACACCGTATGACGCAGCCCCCGTGCCCACCACTCAGTACGCTTCGTTG
CAGCTCTACATCCTGGCAATCGTCGCCGGTGTACTACGGGCCGTGGTGGATGACGGCGAGGCACTGCTACGTTCCCGTCA
GCGCAACTTCAGTCACGCGCTCACTGAGCGCCCGGTCGATGATCCACTGCTGCAGCGCACCCTTGGCGAGCTGAGCGCGA
CCGCTTTCGCCGCAGAGGCCACCGTCCTCGCCGCTGCCGATGCCATCGAAGCCGCCACCGCAACCCTCCGAGACGGTGTA
CCCGATGCACAGCTAGCCCAGGAGGCTCAGGTCGCCGTGGCCAAGGCCAAGGTGCATATCGATGCTGTCGCACTCGATGC
CGCGACCAAGCTCCTTGATCTGGGCGGAGCCAGCGCCGCCAGCCGGACTCGCAACCTGGATCGGCATTGGCGAAACATCC
GAACCATCAGCCTGCACAACCCGGTGCATTACAAAGCGCGAGTGATCGGTCAGAATCTGCTGCACGGCACACCGCTACCG
GCGAATGCGTACTTCTGA

Upstream 100 bases:

>100_bases
CAGGGCGCAGCGATCGGAATCATCATGCCCCATATTGCCGCTTCGGTTCTGGCTGATTCAAAGCGATGCCGCCACTGAGC
ATGCTGCGTACAACGAAGAT

Downstream 100 bases:

>100_bases
GTGGGTCAGGCCGACAAGCTGATTCGCTGTGCGCCGGTGACCGCGCGGTAGCGATCGGGGCTGCAGGTCAGCACAATCAC
CTGAGTCTCGGTGCCTACCG

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTSAPSVLEIRALPGTDTYRNLLAQVAEGARDRDLDDENPFDQVRLLKEAGFGRLRIPTELGGAGLSVRQLFSAIIDVAQ
ADPIVAHIFRTHFWFVEERLRTLADPVSAAWLTKVNEGNLFANAFSEKGSLAVGSLVFNTRLLPVGDAYRLNGEKFYSTG
TLFADYLTVTATTDRDSVASVIVPGDRDGVRLVDDWDGFGQRRTGTGTTIFSQVDVAADEILSETPYDAAPVPTTQYASL
QLYILAIVAGVLRAVVDDGEALLRSRQRNFSHALTERPVDDPLLQRTLGELSATAFAAEATVLAAADAIEAATATLRDGV
PDAQLAQEAQVAVAKAKVHIDAVALDAATKLLDLGGASAASRTRNLDRHWRNIRTISLHNPVHYKARVIGQNLLHGTPLP
ANAYF

Sequences:

>Translated_405_residues
MTSAPSVLEIRALPGTDTYRNLLAQVAEGARDRDLDDENPFDQVRLLKEAGFGRLRIPTELGGAGLSVRQLFSAIIDVAQ
ADPIVAHIFRTHFWFVEERLRTLADPVSAAWLTKVNEGNLFANAFSEKGSLAVGSLVFNTRLLPVGDAYRLNGEKFYSTG
TLFADYLTVTATTDRDSVASVIVPGDRDGVRLVDDWDGFGQRRTGTGTTIFSQVDVAADEILSETPYDAAPVPTTQYASL
QLYILAIVAGVLRAVVDDGEALLRSRQRNFSHALTERPVDDPLLQRTLGELSATAFAAEATVLAAADAIEAATATLRDGV
PDAQLAQEAQVAVAKAKVHIDAVALDAATKLLDLGGASAASRTRNLDRHWRNIRTISLHNPVHYKARVIGQNLLHGTPLP
ANAYF
>Mature_404_residues
TSAPSVLEIRALPGTDTYRNLLAQVAEGARDRDLDDENPFDQVRLLKEAGFGRLRIPTELGGAGLSVRQLFSAIIDVAQA
DPIVAHIFRTHFWFVEERLRTLADPVSAAWLTKVNEGNLFANAFSEKGSLAVGSLVFNTRLLPVGDAYRLNGEKFYSTGT
LFADYLTVTATTDRDSVASVIVPGDRDGVRLVDDWDGFGQRRTGTGTTIFSQVDVAADEILSETPYDAAPVPTTQYASLQ
LYILAIVAGVLRAVVDDGEALLRSRQRNFSHALTERPVDDPLLQRTLGELSATAFAAEATVLAAADAIEAATATLRDGVP
DAQLAQEAQVAVAKAKVHIDAVALDAATKLLDLGGASAASRTRNLDRHWRNIRTISLHNPVHYKARVIGQNLLHGTPLPA
NAYF

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 43727; Mature: 43595

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAPSVLEIRALPGTDTYRNLLAQVAEGARDRDLDDENPFDQVRLLKEAGFGRLRIPTE
CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCHH
LGGAGLSVRQLFSAIIDVAQADPIVAHIFRTHFWFVEERLRTLADPVSAAWLTKVNEGNL
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCE
FANAFSEKGSLAVGSLVFNTRLLPVGDAYRLNGEKFYSTGTLFADYLTVTATTDRDSVAS
EEEHHCCCCCEEEEHHHHHCEEEECCCCEEECCCEEEECCCEEEEEEEEEEECCCCCCEE
VIVPGDRDGVRLVDDWDGFGQRRTGTGTTIFSQVDVAADEILSETPYDAAPVPTTQYASL
EEECCCCCCCEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
QLYILAIVAGVLRAVVDDGEALLRSRQRNFSHALTERPVDDPLLQRTLGELSATAFAAEA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
TVLAAADAIEAATATLRDGVPDAQLAQEAQVAVAKAKVHIDAVALDAATKLLDLGGASAA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCHH
SRTRNLDRHWRNIRTISLHNPVHYKARVIGQNLLHGTPLPANAYF
HHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TSAPSVLEIRALPGTDTYRNLLAQVAEGARDRDLDDENPFDQVRLLKEAGFGRLRIPTE
CCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCHH
LGGAGLSVRQLFSAIIDVAQADPIVAHIFRTHFWFVEERLRTLADPVSAAWLTKVNEGNL
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCE
FANAFSEKGSLAVGSLVFNTRLLPVGDAYRLNGEKFYSTGTLFADYLTVTATTDRDSVAS
EEEHHCCCCCEEEEHHHHHCEEEECCCCEEECCCEEEECCCEEEEEEEEEEECCCCCCEE
VIVPGDRDGVRLVDDWDGFGQRRTGTGTTIFSQVDVAADEILSETPYDAAPVPTTQYASL
EEECCCCCCCEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
QLYILAIVAGVLRAVVDDGEALLRSRQRNFSHALTERPVDDPLLQRTLGELSATAFAAEA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
TVLAAADAIEAATATLRDGVPDAQLAQEAQVAVAKAKVHIDAVALDAATKLLDLGGASAA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCHH
SRTRNLDRHWRNIRTISLHNPVHYKARVIGQNLLHGTPLPANAYF
HHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]