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The map label for this gene is yijC [C]

Identifier: 169628515

GI number: 169628515

Start: 1427766

End: 1428443

Strand: Reverse

Name: yijC [C]

Synonym: MAB_1424c

Alternate gene names: 169628515

Gene position: 1428443-1427766 (Counterclockwise)

Preceding gene: 169628518

Following gene: 169628513

Centisome position: 28.19

GC content: 61.65

Gene sequence:

>678_bases
ATGCGACATAGTCGTGCCGAGAAGAAACTGCATACCCGCCGCACATTGCTCGACGGAACCTTGGAGCTACTGAAGGTACG
TGGCTTCGCGGCTGTGAGCCTGCGCGAGGTGGCCAAGTCGGCCGGATTGGTTCCCACTGCCTTCTACCGGCACTTCGAAT
CGATGGAAGACCTCGGCACGGTTCTGGCCGAGGAGAGCGTTCATGCGCTTCGTGACACCTTTCGCCAAGCCCGGCGCGAG
GCTGGCAGCGACAACCCCGCCAAAATTCTCCGTCTCATGGTCGACCGGGTGAACGAGCACGCGAACAATTTCCGGTTTCT
GGTACGTGAACGTCATGGCGGCTCGCCTCAAATCCGGCGTGCCATCAACAACGAGATGCGCATGCTCACCAACGACGTGG
TGGTGGAACTCGCCCGCAACCCGGCGACGAACCATCACACGACCGAGGACCTGGAAATCGCGGCGGAACTCATCGCCAGC
TCCATTCTCAACACCATCGGCATGCTGGTCGATACTGATCACCCCACCAAGGCCGACGCGGACGCAGCCCTGAATCGCGC
GCTACGCCAGCTGGACCTGGTGACTAGTGGGCTGGCTCATACCCGCACCATGACCACCATCATTGCCGAGCCCGCCGCAC
GCCCGAGCGAATCTTCCGCCACAACAGCAGCACCGTGA

Upstream 100 bases:

>100_bases
CAGTGTGCGCAAGCTAGATGAACCTGTCAATACCAGGCATCAACGTGGTCTCAAACGAAACAAGGTCAAACAGTAGGAGT
ACGCCCGTACACTGACAGGT

Downstream 100 bases:

>100_bases
ACAGACCGATCGCATCGGTGAGCAGGTCCGGCAGGCTCCCGTCCCGGCGCGGAACCCACAGCGCCTGAATCACCTCGGAC
GCCGCCGCGAACATCAGAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRHSRAEKKLHTRRTLLDGTLELLKVRGFAAVSLREVAKSAGLVPTAFYRHFESMEDLGTVLAEESVHALRDTFRQARRE
AGSDNPAKILRLMVDRVNEHANNFRFLVRERHGGSPQIRRAINNEMRMLTNDVVVELARNPATNHHTTEDLEIAAELIAS
SILNTIGMLVDTDHPTKADADAALNRALRQLDLVTSGLAHTRTMTTIIAEPAARPSESSATTAAP

Sequences:

>Translated_225_residues
MRHSRAEKKLHTRRTLLDGTLELLKVRGFAAVSLREVAKSAGLVPTAFYRHFESMEDLGTVLAEESVHALRDTFRQARRE
AGSDNPAKILRLMVDRVNEHANNFRFLVRERHGGSPQIRRAINNEMRMLTNDVVVELARNPATNHHTTEDLEIAAELIAS
SILNTIGMLVDTDHPTKADADAALNRALRQLDLVTSGLAHTRTMTTIIAEPAARPSESSATTAAP
>Mature_225_residues
MRHSRAEKKLHTRRTLLDGTLELLKVRGFAAVSLREVAKSAGLVPTAFYRHFESMEDLGTVLAEESVHALRDTFRQARRE
AGSDNPAKILRLMVDRVNEHANNFRFLVRERHGGSPQIRRAINNEMRMLTNDVVVELARNPATNHHTTEDLEIAAELIAS
SILNTIGMLVDTDHPTKADADAALNRALRQLDLVTSGLAHTRTMTTIIAEPAARPSESSATTAAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693209, Length=127, Percent_Identity=40.1574803149606, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24900; Mature: 24900

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHSRAEKKLHTRRTLLDGTLELLKVRGFAAVSLREVAKSAGLVPTAFYRHFESMEDLGT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VLAEESVHALRDTFRQARREAGSDNPAKILRLMVDRVNEHANNFRFLVRERHGGSPQIRR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AINNEMRMLTNDVVVELARNPATNHHTTEDLEIAAELIASSILNTIGMLVDTDHPTKADA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
DAALNRALRQLDLVTSGLAHTRTMTTIIAEPAARPSESSATTAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRHSRAEKKLHTRRTLLDGTLELLKVRGFAAVSLREVAKSAGLVPTAFYRHFESMEDLGT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VLAEESVHALRDTFRQARREAGSDNPAKILRLMVDRVNEHANNFRFLVRERHGGSPQIRR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AINNEMRMLTNDVVVELARNPATNHHTTEDLEIAAELIASSILNTIGMLVDTDHPTKADA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
DAALNRALRQLDLVTSGLAHTRTMTTIIAEPAARPSESSATTAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]