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The map label for this gene is ykcB [H]

Identifier: 169628422

GI number: 169628422

Start: 1329276

End: 1331243

Strand: Direct

Name: ykcB [H]

Synonym: MAB_1329

Alternate gene names: 169628422

Gene position: 1329276-1331243 (Clockwise)

Preceding gene: 169628421

Following gene: 169628423

Centisome position: 26.23

GC content: 66.41

Gene sequence:

>1968_bases
GTGCTGACGACCACCGCGCCCGAAGCTGCCCCCCGTTCTGCCTCTCGTGAGCGAATCACTCTCTGTGCCTTACTGGTTGG
TACGGCAACCGTCTACCTGTGGAACCTGTCGGCGAATGGATGGGCCAACCAGTTCTACGCCGCGGCCGTGCAGGCCGGGT
CGGTGTCGTGGAAGGCATTCGTCTTCGGCTCGTCGGACGCGGCCAATTCCATCACCGTCGACAAGCCGCCGCTGTTTCTG
TGGCCGATGGAACTGAGTGTCCGGCTGTTCGGCTTCAGCCCATGGTCGATGCTGGTACCGCAAGCGGTCATCGGAGTAGC
GGCGGTGGCCTTGCTGTGGTGGGCCGTTCGTCGTAATGCCGGGCCGACGGCCGCACTCATCGCGGGGCTCGTGCTCGCGC
TCGTTCCCATTTACGCGTCCATGTGCCGATACAACAATCCGGAACCCATGATGCTGCTGCTCATGGTTGCCTCGGTGTGG
GCGGTGCTTGAGGCCGTGCGGGACGGGCGGACCCGGTGGCTGGTGCTCTCGGGTGCCTGCGTGGGGCTGGGTTTTCTCAC
CAAACAGCTCGAGGCATTGATCGCGGTTCCCGCGCTCGCGGCGACGTATCTGTGGTGTGGTCCGCCGCCGCTCTCGGTGC
GTACGCGTCAGTTGGGCGTCGCCGCCGTCGCAGCGGTTCTCGGCGGTGGTTGGTGGGTGGCGCTGGCCGAGCTATGGCCG
GCGTCCTCGCGGCCTTGGATCGGTGGTTCCCCTTCGAACTCGTTTCTGGAGTTGACGTTCGGCTACAACGGTCTGGATCG
GATCACCGGCAAGCATGCGGGCCACAGCCCCATGTCGGCTCTGGCACAGGACAATCCACTGGCTTCTCAGCAGGGATTCG
GACGCATGTTCAGTGCGGTCATCGGCGGCCAGATCAGCTGGCTGTTGGCTGCGGCGCTGGTACTCACCGTCGTCATGGTG
GTGTTGCTGCGCAAGGCGCCGCGGATCGATCCGGAACGTGCGTGCGCGGTCGCCTTCGGTGGCTGGTTGGTGGTCGTGTG
GCTGCTTTTCGATTTCATGACCGGTAAGGGCGGGATGTTCAGCCCGTACTACACCGTGGCGCTGGCCCCCGCCATCGCCG
CCCAAATTGGCCTGGGCACGGCCATGGTGTGGCGCCACCGTGAGACACGTTGGGCGCGATGGCTTTGTGCGGCGCTGGTG
TTCGGGACGGGGACGTGGGCGGTGGTGGTGCTGGCCCGCGAGCCGGAATTCGTGCCGTGGTTGCGGTGGGTGATTGCCGC
GTCCGCCGTGCTTGCCGCCGCGATCTGGGTCAGTGGCCGGTGCCGCGAGGTCGGTGCGGCGACGACGGCGGTGGCCGTAC
TGGCGGGCCCGGTCGCGTTCTGCGTGGACACCACCGGTCACGGCACCCACGGAGGACTACCGCTGGCGGGACCGACCGCG
GCGCATGCCGACTTTGTCCGGGCAATGAGGCAAGCCGCCAAAGAGGCTGGCGAGCAAAAAGAATCAAAGGCGACACCGGC
GCTGGCCGCGATCTTGATGGACGCGCCCAAGGATGACGACCGGACACAGGAGAAGAAGCCCGCCCCGGACCTCACGGAGT
ATCTCGAACACGATGCCGGCCGGTTCACCTGGATGGCGGCGGCGGTGCGGTCCAATACCGCCGCGCCCTATCAACTGACA
TCCCATCGCCCTGTCCTGCCAGTCGGCGGCTTCACCGGCCGCGACCCATTCCCCGCGTTGGCCCAGTTCCAGGACTACGT
CGCGCGGCACCAGATTCATTTCTTCGTCGTAGAACGTTTGGCGGCACCGCCCGAAGGGGGCGACCGGCCAGAAGTGTCCA
CCGCTATCACCGAATGGGTGGAGCGAACCTTCACGCCGCGCGGGTTCCATGGTGTCGCGGTGTTCGACCTGACCAGCCCG
GCACCTGTTCCGGCCGAGCTGACGGCTACGGTGCCCAGCGATCCCTAG

Upstream 100 bases:

>100_bases
ATGTGCGCGTGGCGCTCACCGCGACCGATGAACGCATCGATGCCGCAGCGCATCGCCTGACTGCCAGCTGATCCACAGCA
TCACTGAGTACCTTCAGTGC

Downstream 100 bases:

>100_bases
TGATCGATACCTCACCTACCACACGTAACGTCCAGCCGGATTTTGCCGCTACCTGAGGTTTCCTTGCGTGTTCGCGCGCA
ATCTCCGTCAATCCTCGACA

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 655; Mature: 655

Protein sequence:

>655_residues
MLTTTAPEAAPRSASRERITLCALLVGTATVYLWNLSANGWANQFYAAAVQAGSVSWKAFVFGSSDAANSITVDKPPLFL
WPMELSVRLFGFSPWSMLVPQAVIGVAAVALLWWAVRRNAGPTAALIAGLVLALVPIYASMCRYNNPEPMMLLLMVASVW
AVLEAVRDGRTRWLVLSGACVGLGFLTKQLEALIAVPALAATYLWCGPPPLSVRTRQLGVAAVAAVLGGGWWVALAELWP
ASSRPWIGGSPSNSFLELTFGYNGLDRITGKHAGHSPMSALAQDNPLASQQGFGRMFSAVIGGQISWLLAAALVLTVVMV
VLLRKAPRIDPERACAVAFGGWLVVVWLLFDFMTGKGGMFSPYYTVALAPAIAAQIGLGTAMVWRHRETRWARWLCAALV
FGTGTWAVVVLAREPEFVPWLRWVIAASAVLAAAIWVSGRCREVGAATTAVAVLAGPVAFCVDTTGHGTHGGLPLAGPTA
AHADFVRAMRQAAKEAGEQKESKATPALAAILMDAPKDDDRTQEKKPAPDLTEYLEHDAGRFTWMAAAVRSNTAAPYQLT
SHRPVLPVGGFTGRDPFPALAQFQDYVARHQIHFFVVERLAAPPEGGDRPEVSTAITEWVERTFTPRGFHGVAVFDLTSP
APVPAELTATVPSDP

Sequences:

>Translated_655_residues
MLTTTAPEAAPRSASRERITLCALLVGTATVYLWNLSANGWANQFYAAAVQAGSVSWKAFVFGSSDAANSITVDKPPLFL
WPMELSVRLFGFSPWSMLVPQAVIGVAAVALLWWAVRRNAGPTAALIAGLVLALVPIYASMCRYNNPEPMMLLLMVASVW
AVLEAVRDGRTRWLVLSGACVGLGFLTKQLEALIAVPALAATYLWCGPPPLSVRTRQLGVAAVAAVLGGGWWVALAELWP
ASSRPWIGGSPSNSFLELTFGYNGLDRITGKHAGHSPMSALAQDNPLASQQGFGRMFSAVIGGQISWLLAAALVLTVVMV
VLLRKAPRIDPERACAVAFGGWLVVVWLLFDFMTGKGGMFSPYYTVALAPAIAAQIGLGTAMVWRHRETRWARWLCAALV
FGTGTWAVVVLAREPEFVPWLRWVIAASAVLAAAIWVSGRCREVGAATTAVAVLAGPVAFCVDTTGHGTHGGLPLAGPTA
AHADFVRAMRQAAKEAGEQKESKATPALAAILMDAPKDDDRTQEKKPAPDLTEYLEHDAGRFTWMAAAVRSNTAAPYQLT
SHRPVLPVGGFTGRDPFPALAQFQDYVARHQIHFFVVERLAAPPEGGDRPEVSTAITEWVERTFTPRGFHGVAVFDLTSP
APVPAELTATVPSDP
>Mature_655_residues
MLTTTAPEAAPRSASRERITLCALLVGTATVYLWNLSANGWANQFYAAAVQAGSVSWKAFVFGSSDAANSITVDKPPLFL
WPMELSVRLFGFSPWSMLVPQAVIGVAAVALLWWAVRRNAGPTAALIAGLVLALVPIYASMCRYNNPEPMMLLLMVASVW
AVLEAVRDGRTRWLVLSGACVGLGFLTKQLEALIAVPALAATYLWCGPPPLSVRTRQLGVAAVAAVLGGGWWVALAELWP
ASSRPWIGGSPSNSFLELTFGYNGLDRITGKHAGHSPMSALAQDNPLASQQGFGRMFSAVIGGQISWLLAAALVLTVVMV
VLLRKAPRIDPERACAVAFGGWLVVVWLLFDFMTGKGGMFSPYYTVALAPAIAAQIGLGTAMVWRHRETRWARWLCAALV
FGTGTWAVVVLAREPEFVPWLRWVIAASAVLAAAIWVSGRCREVGAATTAVAVLAGPVAFCVDTTGHGTHGGLPLAGPTA
AHADFVRAMRQAAKEAGEQKESKATPALAAILMDAPKDDDRTQEKKPAPDLTEYLEHDAGRFTWMAAAVRSNTAAPYQLT
SHRPVLPVGGFTGRDPFPALAQFQDYVARHQIHFFVVERLAAPPEGGDRPEVSTAITEWVERTFTPRGFHGVAVFDLTSP
APVPAELTATVPSDP

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 39 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003342 [H]

Pfam domain/function: PF02366 PMT [H]

EC number: NA

Molecular weight: Translated: 70021; Mature: 70021

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTTTAPEAAPRSASRERITLCALLVGTATVYLWNLSANGWANQFYAAAVQAGSVSWKAF
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE
VFGSSDAANSITVDKPPLFLWPMELSVRLFGFSPWSMLVPQAVIGVAAVALLWWAVRRNA
EEECCCCCCCEEECCCCEEEEEHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GPTAALIAGLVLALVPIYASMCRYNNPEPMMLLLMVASVWAVLEAVRDGRTRWLVLSGAC
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
VGLGFLTKQLEALIAVPALAATYLWCGPPPLSVRTRQLGVAAVAAVLGGGWWVALAELWP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCC
ASSRPWIGGSPSNSFLELTFGYNGLDRITGKHAGHSPMSALAQDNPLASQQGFGRMFSAV
CCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
IGGQISWLLAAALVLTVVMVVLLRKAPRIDPERACAVAFGGWLVVVWLLFDFMTGKGGMF
HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SPYYTVALAPAIAAQIGLGTAMVWRHRETRWARWLCAALVFGTGTWAVVVLAREPEFVPW
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
LRWVIAASAVLAAAIWVSGRCREVGAATTAVAVLAGPVAFCVDTTGHGTHGGLPLAGPTA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCH
AHADFVRAMRQAAKEAGEQKESKATPALAAILMDAPKDDDRTQEKKPAPDLTEYLEHDAG
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCC
RFTWMAAAVRSNTAAPYQLTSHRPVLPVGGFTGRDPFPALAQFQDYVARHQIHFFVVERL
CHHHHHHHHHCCCCCCEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAPPEGGDRPEVSTAITEWVERTFTPRGFHGVAVFDLTSPAPVPAELTATVPSDP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MLTTTAPEAAPRSASRERITLCALLVGTATVYLWNLSANGWANQFYAAAVQAGSVSWKAF
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE
VFGSSDAANSITVDKPPLFLWPMELSVRLFGFSPWSMLVPQAVIGVAAVALLWWAVRRNA
EEECCCCCCCEEECCCCEEEEEHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GPTAALIAGLVLALVPIYASMCRYNNPEPMMLLLMVASVWAVLEAVRDGRTRWLVLSGAC
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
VGLGFLTKQLEALIAVPALAATYLWCGPPPLSVRTRQLGVAAVAAVLGGGWWVALAELWP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCC
ASSRPWIGGSPSNSFLELTFGYNGLDRITGKHAGHSPMSALAQDNPLASQQGFGRMFSAV
CCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
IGGQISWLLAAALVLTVVMVVLLRKAPRIDPERACAVAFGGWLVVVWLLFDFMTGKGGMF
HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SPYYTVALAPAIAAQIGLGTAMVWRHRETRWARWLCAALVFGTGTWAVVVLAREPEFVPW
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
LRWVIAASAVLAAAIWVSGRCREVGAATTAVAVLAGPVAFCVDTTGHGTHGGLPLAGPTA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCH
AHADFVRAMRQAAKEAGEQKESKATPALAAILMDAPKDDDRTQEKKPAPDLTEYLEHDAG
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCC
RFTWMAAAVRSNTAAPYQLTSHRPVLPVGGFTGRDPFPALAQFQDYVARHQIHFFVVERL
CHHHHHHHHHCCCCCCEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAPPEGGDRPEVSTAITEWVERTFTPRGFHGVAVFDLTSPAPVPAELTATVPSDP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]