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The map label for this gene is dapL [H]

Identifier: 169628421

GI number: 169628421

Start: 1328155

End: 1329246

Strand: Direct

Name: dapL [H]

Synonym: MAB_1328

Alternate gene names: 169628421

Gene position: 1328155-1329246 (Clockwise)

Preceding gene: 169628420

Following gene: 169628422

Centisome position: 26.21

GC content: 66.94

Gene sequence:

>1092_bases
GTGTCGGCGTCGCTCCCTGAATTTCCGTGGGACACGATCGCCGACGCCAAGGCGGCGGCTGCGGCACATCCCGACGGTAT
CGTCGACCTCTCGGTCGGCACCCCTGTCGATAGCGTCGCCCCCGTCATACGTGATGCGTTGGCGGCGGCCAGTGACCTGC
CCGGGTATCCGGCGACCGCCGGTACGCCCGCACTGCGACAGGCCATCCGTGATGCGGTGACGCGCAGATACGGCGTTGTC
CCACTGGCGGACAATGCTGTGTTGCCGGTGATCGGCACCAAGGAACTCATCGCCTGGCTGCCGACCCTGCTGGGGCTGGG
CGCCGACGACCTGATCGTCATCCCCGAATTGGCCTATCCCACCTATGAAGTGGGAGCGCGGCTGGCGCAGGTGCCCACGG
TTCGGGCGGACTCCCTGACACAACTGGGCCCGCAGCGCCCCACCCTCATCTATCTCAACTCGCCAAGCAACCCGACCGGT
GCGGTGCTTCCTGTCGAACACCTGCGCAAGGTGGTCGAGTGGGCGCGCGAGCGCGGCGCTCTCGTGGTGTCCGACGAGTG
CTATCTCGGTCTCGGGTGGGATGCCGAGCCGGTGTCAATTCTCGATCCCAGGGTCTGCGACGGCGAGACCGCAGGGCTGT
TAGCGGTGCATTCGCTGTCCAAGACCTCGTCGCTCGCCGGATACCGTGCCGGATTTGTACTGGGCGACGGCTCGGTGGTC
GGCGAGCTGCTCGCGGTGCGTAAGCACGCCGGGATGATGGTGCCCGGGCCGGTGCAGGCCGCGATGACGGCCGCGCTGAG
CGAGGATGAACACCAGCGGGAGCAGCGCGCCCGCTATGAGCACCGTCGCGACAGGCTGTCGAAGGCTTTGACTGACAACG
GCTTCCGTATCGATCATTCCGAGGCAGGTCTGTATCTGTGGGCCACCAGGGGCGATTCCTGCGATGATGCGTTGGCGTAT
CTGGCGCGGCGGGGAATTCTGGTGGCGCCCGGCCGGTTCTATGGGCCCCGCGGTAGAGAGCATGTGCGCGTGGCGCTCAC
CGCGACCGATGAACGCATCGATGCCGCAGCGCATCGCCTGACTGCCAGCTGA

Upstream 100 bases:

>100_bases
GCGGCGCCGCGAAGGTGGGCAAGACCGATTACGACCCGCCGTCGGTCAAGGAGCTTCCGCCCATGGGTGAGGGACACTGA
GCTCGCTCGTGCATTCCAGA

Downstream 100 bases:

>100_bases
TCCACAGCATCACTGAGTACCTTCAGTGCGTGCTGACGACCACCGCGCCCGAAGCTGCCCCCCGTTCTGCCTCTCGTGAG
CGAATCACTCTCTGTGCCTT

Product: N-succinyldiaminopimelate aminotransferase

Products: NA

Alternate protein names: DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase [H]

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSASLPEFPWDTIADAKAAAAAHPDGIVDLSVGTPVDSVAPVIRDALAAASDLPGYPATAGTPALRQAIRDAVTRRYGVV
PLADNAVLPVIGTKELIAWLPTLLGLGADDLIVIPELAYPTYEVGARLAQVPTVRADSLTQLGPQRPTLIYLNSPSNPTG
AVLPVEHLRKVVEWARERGALVVSDECYLGLGWDAEPVSILDPRVCDGETAGLLAVHSLSKTSSLAGYRAGFVLGDGSVV
GELLAVRKHAGMMVPGPVQAAMTAALSEDEHQREQRARYEHRRDRLSKALTDNGFRIDHSEAGLYLWATRGDSCDDALAY
LARRGILVAPGRFYGPRGREHVRVALTATDERIDAAAHRLTAS

Sequences:

>Translated_363_residues
MSASLPEFPWDTIADAKAAAAAHPDGIVDLSVGTPVDSVAPVIRDALAAASDLPGYPATAGTPALRQAIRDAVTRRYGVV
PLADNAVLPVIGTKELIAWLPTLLGLGADDLIVIPELAYPTYEVGARLAQVPTVRADSLTQLGPQRPTLIYLNSPSNPTG
AVLPVEHLRKVVEWARERGALVVSDECYLGLGWDAEPVSILDPRVCDGETAGLLAVHSLSKTSSLAGYRAGFVLGDGSVV
GELLAVRKHAGMMVPGPVQAAMTAALSEDEHQREQRARYEHRRDRLSKALTDNGFRIDHSEAGLYLWATRGDSCDDALAY
LARRGILVAPGRFYGPRGREHVRVALTATDERIDAAAHRLTAS
>Mature_362_residues
SASLPEFPWDTIADAKAAAAAHPDGIVDLSVGTPVDSVAPVIRDALAAASDLPGYPATAGTPALRQAIRDAVTRRYGVVP
LADNAVLPVIGTKELIAWLPTLLGLGADDLIVIPELAYPTYEVGARLAQVPTVRADSLTQLGPQRPTLIYLNSPSNPTGA
VLPVEHLRKVVEWARERGALVVSDECYLGLGWDAEPVSILDPRVCDGETAGLLAVHSLSKTSSLAGYRAGFVLGDGSVVG
ELLAVRKHAGMMVPGPVQAAMTAALSEDEHQREQRARYEHRRDRLSKALTDNGFRIDHSEAGLYLWATRGDSCDDALAYL
ARRGILVAPGRFYGPRGREHVRVALTATDERIDAAAHRLTAS

Specific function: Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788722, Length=385, Percent_Identity=30.6493506493506, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1786816, Length=382, Percent_Identity=24.0837696335079, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788627, Length=361, Percent_Identity=23.2686980609418, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71994476, Length=393, Percent_Identity=25.4452926208651, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71994472, Length=393, Percent_Identity=25.4452926208651, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR019881
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.83 [H]

Molecular weight: Translated: 38663; Mature: 38532

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS00435 PEROXIDASE_1 ; PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASLPEFPWDTIADAKAAAAAHPDGIVDLSVGTPVDSVAPVIRDALAAASDLPGYPATA
CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCC
GTPALRQAIRDAVTRRYGVVPLADNAVLPVIGTKELIAWLPTLLGLGADDLIVIPELAYP
CCHHHHHHHHHHHHHHCCCEEECCCCEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
TYEVGARLAQVPTVRADSLTQLGPQRPTLIYLNSPSNPTGAVLPVEHLRKVVEWARERGA
CHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCEECHHHHHHHHHHHHHCCC
LVVSDECYLGLGWDAEPVSILDPRVCDGETAGLLAVHSLSKTSSLAGYRAGFVLGDGSVV
EEEECCEEEECCCCCCCCHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEEEEECHHHH
GELLAVRKHAGMMVPGPVQAAMTAALSEDEHQREQRARYEHRRDRLSKALTDNGFRIDHS
HHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
EAGLYLWATRGDSCDDALAYLARRGILVAPGRFYGPRGREHVRVALTATDERIDAAAHRL
CCCEEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHH
TAS
CCC
>Mature Secondary Structure 
SASLPEFPWDTIADAKAAAAAHPDGIVDLSVGTPVDSVAPVIRDALAAASDLPGYPATA
CCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCC
GTPALRQAIRDAVTRRYGVVPLADNAVLPVIGTKELIAWLPTLLGLGADDLIVIPELAYP
CCHHHHHHHHHHHHHHCCCEEECCCCEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
TYEVGARLAQVPTVRADSLTQLGPQRPTLIYLNSPSNPTGAVLPVEHLRKVVEWARERGA
CHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCEECHHHHHHHHHHHHHCCC
LVVSDECYLGLGWDAEPVSILDPRVCDGETAGLLAVHSLSKTSSLAGYRAGFVLGDGSVV
EEEECCEEEECCCCCCCCHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEEEEECHHHH
GELLAVRKHAGMMVPGPVQAAMTAALSEDEHQREQRARYEHRRDRLSKALTDNGFRIDHS
HHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
EAGLYLWATRGDSCDDALAYLARRGILVAPGRFYGPRGREHVRVALTATDERIDAAAHRL
CCCEEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHH
TAS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA