The gene/protein map for NC_010397 is currently unavailable.
Definition Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence.
Accession NC_010397
Length 5,067,172

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The map label for this gene is ybbO [C]

Identifier: 169628308

GI number: 169628308

Start: 1227379

End: 1228206

Strand: Reverse

Name: ybbO [C]

Synonym: MAB_1215c

Alternate gene names: 169628308

Gene position: 1228206-1227379 (Counterclockwise)

Preceding gene: 169628309

Following gene: 169628307

Centisome position: 24.24

GC content: 65.34

Gene sequence:

>828_bases
ATGCCCCGATTCGAGCCACATCCGGCCCGGCGACCGTCCATCATCGCCGGGGCTTCGTCGGGCATCGGAGCGGCCACCGC
AATCGAACTGGCCGGTAGGGGTTTTCCGGTCGCGCTGGGCGCCCGCCGCGTGGATAAGTTGACCGAGCTCGTCGAGAAGA
TCCGCTCCGACGGCGGTGAGGCCGTCGCGTTTCCGCTGGACGTCACCGATGCCGATTCCGTGAAATCCTTCGTCGCGGAA
AGTATTGACGCACTCGGGGAGATCGATCTGTTGGTATCCGGTGCCGGGGACATGTATCCCGGCCGGGTACACGAGATGAG
TGCCGCGACCTTTGCCGCGCAGATCCAGGTGCATCTGTTGGGCGCCAATCAGCTCGCCACCGAGGTGGTACCCGACATGG
TGTCGCGGCGACGGGGTGATGTTGTCTTCATCGGCTCCGATGTCGCCCTGCATCAGCGCCCGCATATGGGGGCCTACGGG
GCCGCCAAGGCCGCACTGCTGGCGATGGTCAACACCATGCGCATGGAACTGGAAGGCACCGGCGTCCGGGCGTCCATCGT
GCATCCGGGGCCCACCCTGACCTCGATGGGCTGGCAGCTGTCCGCCGAGCAGGTTGGTCCCATGCTGGAGGACTGGAAGA
GCTGGGGCCAGGCCCGCCACTCCTACTTCCTGCGCCCCTCCGATATCGCGCGTGCGGTGACCTTCGTGGCCGAAACACCA
CGGGGCGCACATATCCCGGAGATGGAAGTGCAGCCGGAAGCACCACTCAAGGATGCACCGGCGGACAAACAGAAGCTTGA
GCTCGGCGAGGAAGGAATGCCCTCATGA

Upstream 100 bases:

>100_bases
GCTACGAGATCGACGAAAGAAATTCCGTACGTGTGCATTCCAGTAATGTCCGCGGATTCGCCCATCTGCCCATGACAGTG
CAGTTGAGAGAGGGACGCTG

Downstream 100 bases:

>100_bases
CCACGCCCACCGTTCCCCGGGTCTCCGGCGGCGAGGACCAATACGGCCACCTCGAAGAGTTCCGCACCGATCCCATCGCA
CTGATGAAGCGCATCCGTGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MPRFEPHPARRPSIIAGASSGIGAATAIELAGRGFPVALGARRVDKLTELVEKIRSDGGEAVAFPLDVTDADSVKSFVAE
SIDALGEIDLLVSGAGDMYPGRVHEMSAATFAAQIQVHLLGANQLATEVVPDMVSRRRGDVVFIGSDVALHQRPHMGAYG
AAKAALLAMVNTMRMELEGTGVRASIVHPGPTLTSMGWQLSAEQVGPMLEDWKSWGQARHSYFLRPSDIARAVTFVAETP
RGAHIPEMEVQPEAPLKDAPADKQKLELGEEGMPS

Sequences:

>Translated_275_residues
MPRFEPHPARRPSIIAGASSGIGAATAIELAGRGFPVALGARRVDKLTELVEKIRSDGGEAVAFPLDVTDADSVKSFVAE
SIDALGEIDLLVSGAGDMYPGRVHEMSAATFAAQIQVHLLGANQLATEVVPDMVSRRRGDVVFIGSDVALHQRPHMGAYG
AAKAALLAMVNTMRMELEGTGVRASIVHPGPTLTSMGWQLSAEQVGPMLEDWKSWGQARHSYFLRPSDIARAVTFVAETP
RGAHIPEMEVQPEAPLKDAPADKQKLELGEEGMPS
>Mature_274_residues
PRFEPHPARRPSIIAGASSGIGAATAIELAGRGFPVALGARRVDKLTELVEKIRSDGGEAVAFPLDVTDADSVKSFVAES
IDALGEIDLLVSGAGDMYPGRVHEMSAATFAAQIQVHLLGANQLATEVVPDMVSRRRGDVVFIGSDVALHQRPHMGAYGA
AKAALLAMVNTMRMELEGTGVRASIVHPGPTLTSMGWQLSAEQVGPMLEDWKSWGQARHSYFLRPSDIARAVTFVAETPR
GAHIPEMEVQPEAPLKDAPADKQKLELGEEGMPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=29.9465240641711, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI4503817, Length=201, Percent_Identity=28.3582089552239, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=26.4550264550265, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI7657478, Length=200, Percent_Identity=30.5, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI109715829, Length=255, Percent_Identity=26.2745098039216, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI5031737, Length=193, Percent_Identity=28.4974093264249, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI32483357, Length=241, Percent_Identity=26.1410788381743, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=28.042328042328, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI40254992, Length=226, Percent_Identity=26.5486725663717, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI19923817, Length=217, Percent_Identity=22.1198156682028, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI226371731, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI157739938, Length=225, Percent_Identity=24.8888888888889, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4557649, Length=196, Percent_Identity=27.0408163265306, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI59889578, Length=143, Percent_Identity=32.1678321678322, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4504505, Length=191, Percent_Identity=27.2251308900524, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI146231950, Length=210, Percent_Identity=28.0952380952381, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1786701, Length=197, Percent_Identity=32.994923857868, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787820, Length=244, Percent_Identity=27.4590163934426, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786812, Length=187, Percent_Identity=31.5508021390374, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789378, Length=200, Percent_Identity=30, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787335, Length=228, Percent_Identity=29.8245614035088, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787905, Length=230, Percent_Identity=28.2608695652174, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082100, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=25.6704980842912, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=27.6515151515151, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=254, Percent_Identity=26.3779527559055, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=198, Percent_Identity=29.7979797979798, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=25.968992248062, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=26.8939393939394, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=248, Percent_Identity=28.2258064516129, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=227, Percent_Identity=23.3480176211454, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=26.6409266409266, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=258, Percent_Identity=25.968992248062, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=25.8964143426295, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=194, Percent_Identity=29.8969072164948, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=25.1937984496124, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=231, Percent_Identity=25.974025974026, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=27.2030651340996, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=25.2577319587629, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=27.734375, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=258, Percent_Identity=24.031007751938, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=212, Percent_Identity=28.7735849056604, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=27.0833333333333, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=134, Percent_Identity=23.8805970149254, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=30.9644670050761, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24641232, Length=253, Percent_Identity=29.2490118577075, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007236, Length=251, Percent_Identity=27.4900398406374, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571526, Length=233, Percent_Identity=30.9012875536481, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24644339, Length=230, Percent_Identity=28.2608695652174, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=239, Percent_Identity=31.3807531380753, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007234, Length=251, Percent_Identity=27.4900398406374, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24663911, Length=261, Percent_Identity=30.2681992337165, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21358495, Length=208, Percent_Identity=26.4423076923077, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648693, Length=256, Percent_Identity=28.125, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21355889, Length=256, Percent_Identity=28.125, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24641388, Length=256, Percent_Identity=27.734375, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161076933, Length=187, Percent_Identity=24.5989304812834, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24584744, Length=206, Percent_Identity=24.7572815533981, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28574402, Length=206, Percent_Identity=24.7572815533981, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24584748, Length=187, Percent_Identity=24.5989304812834, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=29.1891891891892, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21356301, Length=189, Percent_Identity=30.6878306878307, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571387, Length=255, Percent_Identity=25.4901960784314, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI18859837, Length=188, Percent_Identity=27.1276595744681, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29279; Mature: 29148

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MPRFEPHPARRPSIIAGASSGIGAATAIELAGRGFPVALGARRVDKLTELVEKIRSDGGE
CCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCC
AVAFPLDVTDADSVKSFVAESIDALGEIDLLVSGAGDMYPGRVHEMSAATFAAQIQVHLL
EEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEE
GANQLATEVVPDMVSRRRGDVVFIGSDVALHQRPHMGAYGAAKAALLAMVNTMRMELEGT
CCHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHHEEEECC
GVRASIVHPGPTLTSMGWQLSAEQVGPMLEDWKSWGQARHSYFLRPSDIARAVTFVAETP
CEEEEEECCCCCHHHCCCEECHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
RGAHIPEMEVQPEAPLKDAPADKQKLELGEEGMPS
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
PRFEPHPARRPSIIAGASSGIGAATAIELAGRGFPVALGARRVDKLTELVEKIRSDGGE
CCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCC
AVAFPLDVTDADSVKSFVAESIDALGEIDLLVSGAGDMYPGRVHEMSAATFAAQIQVHLL
EEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEE
GANQLATEVVPDMVSRRRGDVVFIGSDVALHQRPHMGAYGAAKAALLAMVNTMRMELEGT
CCHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHHEEEECC
GVRASIVHPGPTLTSMGWQLSAEQVGPMLEDWKSWGQARHSYFLRPSDIARAVTFVAETP
CEEEEEECCCCCHHHCCCEECHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
RGAHIPEMEVQPEAPLKDAPADKQKLELGEEGMPS
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1905979; 11679669 [H]