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The map label for this gene is ycdB [H]

Identifier: 169628253

GI number: 169628253

Start: 1176042

End: 1177289

Strand: Direct

Name: ycdB [H]

Synonym: MAB_1160

Alternate gene names: 169628253

Gene position: 1176042-1177289 (Clockwise)

Preceding gene: 169628252

Following gene: 169628257

Centisome position: 23.21

GC content: 64.58

Gene sequence:

>1248_bases
TTGACCAAGGAGTCGCGCAATATGGATGTCAATCGCAGGAACTTCCTTCGTGGTGCCGCCGTCGGAGCCGCGGGTACCGC
GATCACGGGTGCGGCGCTCGTCAAGGGTGCCGAGGTCGATGCGAACGCGGCAGCGGTGGCTGTCCCGCCCAGCCGGTATC
CGTTCCATGGGGTGCACCAATCCGGGATTCTGGTTCCGCCCCCGGCCGAAAAGCAGAACTTCGCCTGTCACGTGGCCTTC
GATGTGATCTCGAAGGACAAGGACGCGGTGGTGGCCGCCTTCAAGACGCTCACCGCCCGTGCGCGGTTCCTATGCGATGG
TGGCACCCCGCCGGACTTGGGCATCGGTGAGCCCCCCGCCGACAGTGCGGTACTGGGCCCGGTGGTCGAATCGGATGGAT
TGACGGTGACGGTCGCCGTTGGTTCGAGCCTGTTCGACCGGCGGTTCGGGCTCGCGGATCGCAAACCCGCCAAGTTGAAG
CCCATGACGGTGTTTCCCAACGACTTTCCCGAGGCGGCCTGGTCGCACGGGGATCTGTTGGTACAGCTGTGCGCCCACAA
CCCGGACACGGTGCATCACGCATTGCGGGATATCACCCGCGCCGTCCGGGGTGATCTACAAATGCGTTGGCGCATAGAGG
GATACAACTCGCCGCCGCGCCCGTCCGGGACGGGCCGCAACCTGTTGGGGTTCAAGGACGGTACCGCCAACCCGGTATCC
GATGACGCCGAGAAGCTGGTATGGACCGGCGACGGTGAACCCGCCTGGACCGCGGGGGGCACCTACATGGTGGTGCGCTT
GATCCGCATGATGGTCGAGTTCTGGGACCGTGTCTCCATCAACGAGCAGGAGCGCATGTTCGGCCGCCGCCGCGACAGCG
GTGCGCCGCTGGACGGCAACAACGAGTTCGATACGCCCAACTATGCCGCCGACGCGGACGGCAAGACGATTCCGCTCGAC
GCGCACATCCGGCTGGCCAATCCGCGCACCGGCGACACCGACAACCAGCGGCTGGTGCGCCGCTCCTACAACTACGACCT
GGGCGTGGATGCGAACGGCAACATGCAGTCAGGCCACGTCTTCGTCTGCTACCAACAGGATCTGGAGCGTCAGTTCGAGA
CGGTGCAGAACCGTCTCAACGACGAGCCACTCATTGATTACGTGCAGCCGTTCGGGGGCGGCTACTTCTTTGCGCTGCCC
GGTATCGCTGATGAAAAGGACTGGTACGGCAGGGCTCTACTCGGCTAG

Upstream 100 bases:

>100_bases
AGGTGCCGCTGCGCCAGCGACAGTCGGTAAACGCGGCGCTCGGCAATGCGGTCGAGAAGCTTGCCTCGGTACCGCTGCTC
ATCGAACTTCCGCCGAGCCG

Downstream 100 bases:

>100_bases
CACCATCAGCCGAAAAGCGCCTGGCCCCAGTACTCCTTGGGTCCCAGGCCCGGTGGGCAGGCAAAGATGGCCGAACCGGT
GTGCAGGATGTATTCGTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MTKESRNMDVNRRNFLRGAAVGAAGTAITGAALVKGAEVDANAAAVAVPPSRYPFHGVHQSGILVPPPAEKQNFACHVAF
DVISKDKDAVVAAFKTLTARARFLCDGGTPPDLGIGEPPADSAVLGPVVESDGLTVTVAVGSSLFDRRFGLADRKPAKLK
PMTVFPNDFPEAAWSHGDLLVQLCAHNPDTVHHALRDITRAVRGDLQMRWRIEGYNSPPRPSGTGRNLLGFKDGTANPVS
DDAEKLVWTGDGEPAWTAGGTYMVVRLIRMMVEFWDRVSINEQERMFGRRRDSGAPLDGNNEFDTPNYAADADGKTIPLD
AHIRLANPRTGDTDNQRLVRRSYNYDLGVDANGNMQSGHVFVCYQQDLERQFETVQNRLNDEPLIDYVQPFGGGYFFALP
GIADEKDWYGRALLG

Sequences:

>Translated_415_residues
MTKESRNMDVNRRNFLRGAAVGAAGTAITGAALVKGAEVDANAAAVAVPPSRYPFHGVHQSGILVPPPAEKQNFACHVAF
DVISKDKDAVVAAFKTLTARARFLCDGGTPPDLGIGEPPADSAVLGPVVESDGLTVTVAVGSSLFDRRFGLADRKPAKLK
PMTVFPNDFPEAAWSHGDLLVQLCAHNPDTVHHALRDITRAVRGDLQMRWRIEGYNSPPRPSGTGRNLLGFKDGTANPVS
DDAEKLVWTGDGEPAWTAGGTYMVVRLIRMMVEFWDRVSINEQERMFGRRRDSGAPLDGNNEFDTPNYAADADGKTIPLD
AHIRLANPRTGDTDNQRLVRRSYNYDLGVDANGNMQSGHVFVCYQQDLERQFETVQNRLNDEPLIDYVQPFGGGYFFALP
GIADEKDWYGRALLG
>Mature_414_residues
TKESRNMDVNRRNFLRGAAVGAAGTAITGAALVKGAEVDANAAAVAVPPSRYPFHGVHQSGILVPPPAEKQNFACHVAFD
VISKDKDAVVAAFKTLTARARFLCDGGTPPDLGIGEPPADSAVLGPVVESDGLTVTVAVGSSLFDRRFGLADRKPAKLKP
MTVFPNDFPEAAWSHGDLLVQLCAHNPDTVHHALRDITRAVRGDLQMRWRIEGYNSPPRPSGTGRNLLGFKDGTANPVSD
DAEKLVWTGDGEPAWTAGGTYMVVRLIRMMVEFWDRVSINEQERMFGRRRDSGAPLDGNNEFDTPNYAADADGKTIPLDA
HIRLANPRTGDTDNQRLVRRSYNYDLGVDANGNMQSGHVFVCYQQDLERQFETVQNRLNDEPLIDYVQPFGGGYFFALPG
IADEKDWYGRALLG

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=417, Percent_Identity=48.6810551558753, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 45280; Mature: 45149

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKESRNMDVNRRNFLRGAAVGAAGTAITGAALVKGAEVDANAAAVAVPPSRYPFHGVHQ
CCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC
SGILVPPPAEKQNFACHVAFDVISKDKDAVVAAFKTLTARARFLCDGGTPPDLGIGEPPA
CCEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCC
DSAVLGPVVESDGLTVTVAVGSSLFDRRFGLADRKPAKLKPMTVFPNDFPEAAWSHGDLL
CCCEECCEECCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHCCCCHHH
VQLCAHNPDTVHHALRDITRAVRGDLQMRWRIEGYNSPPRPSGTGRNLLGFKDGTANPVS
HHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCC
DDAEKLVWTGDGEPAWTAGGTYMVVRLIRMMVEFWDRVSINEQERMFGRRRDSGAPLDGN
CCCCEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCC
NEFDTPNYAADADGKTIPLDAHIRLANPRTGDTDNQRLVRRSYNYDLGVDANGNMQSGHV
CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEE
FVCYQQDLERQFETVQNRLNDEPLIDYVQPFGGGYFFALPGIADEKDWYGRALLG
EEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKESRNMDVNRRNFLRGAAVGAAGTAITGAALVKGAEVDANAAAVAVPPSRYPFHGVHQ
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC
SGILVPPPAEKQNFACHVAFDVISKDKDAVVAAFKTLTARARFLCDGGTPPDLGIGEPPA
CCEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCC
DSAVLGPVVESDGLTVTVAVGSSLFDRRFGLADRKPAKLKPMTVFPNDFPEAAWSHGDLL
CCCEECCEECCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHCCCCHHH
VQLCAHNPDTVHHALRDITRAVRGDLQMRWRIEGYNSPPRPSGTGRNLLGFKDGTANPVS
HHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCC
DDAEKLVWTGDGEPAWTAGGTYMVVRLIRMMVEFWDRVSINEQERMFGRRRDSGAPLDGN
CCCCEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCC
NEFDTPNYAADADGKTIPLDAHIRLANPRTGDTDNQRLVRRSYNYDLGVDANGNMQSGHV
CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEE
FVCYQQDLERQFETVQNRLNDEPLIDYVQPFGGGYFFALPGIADEKDWYGRALLG
EEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]