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The map label for this gene is 169628086

Identifier: 169628086

GI number: 169628086

Start: 997776

End: 998390

Strand: Direct

Name: 169628086

Synonym: MAB_0989

Alternate gene names: NA

Gene position: 997776-998390 (Clockwise)

Preceding gene: 169628083

Following gene: 169628088

Centisome position: 19.69

GC content: 62.44

Gene sequence:

>615_bases
ATGGCGAGTGATGTGTCAACGGGGTTGACTAAGGCGGCGCGGGGGCGACAGGTTTCCCAATGGACTCCCCGCGAGGTGGA
GCTGCTCAAGGTCACATTGCGCCTGCTGCAGGAACACGGATACGACCGGTTGTCGGTCGATGAGGTCGCCGCGGAGTCGA
AGGCGAGCAAGGCCACGATCTATCGGCGTTGGCCATCCAAGGCGGAGCTGGTGCTGGCAGCCTTCATCGAGGGTATGCGC
GCGCAGTTGGTCCGCCCGAACACTGGCTCCCTGCGTGAGGATCTGCTGCGGATAGGTACCAATGCGCTCGCCGATGTACG
TCGCAATACACCCGTGATGCGGGGGCTGTTGATCGAGATTGAGCGAAATCCGGCCTTGACGAAGGCATTTCGAACCAAGT
TTGTCGACGAGCGCAAGGCGCTGATCGACGACGTGCTGTTCGCCGCCGTGCAGCGGGGTGAGATTGACGCGGACGCCGTC
AACGAGGAACTCTGGGATCTGCTGCCCGGGTATCTGGTGTTCCGCTCACTGCTGCCGGTGAGGTCACCGACTGCCGACAC
CGTGCGGACACTGGTCGACGATGTCATCATGCCGAGTCTCACCCGGGAGCGCTAA

Upstream 100 bases:

>100_bases
AGCGCTTGAGGAGATTCCAGAACCAGCCTTGCATCAGCGCCCACATCCTCTCGATGGTCGGCTGCCCGACTTTGGCGGAA
CGGTACGGTACCGTACTCTC

Downstream 100 bases:

>100_bases
CTGCGGTGGGGGTATCCATTCGGTGGTGCCGTCTTTGCGTTTTCGGGTGGTCCAGCCGTGGCCTAGGAGGCGGTGATGCG
GTGCGCAGGCGAAGGTGAGG

Product: putative HTH-type transcriptional regulator TetR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MASDVSTGLTKAARGRQVSQWTPREVELLKVTLRLLQEHGYDRLSVDEVAAESKASKATIYRRWPSKAELVLAAFIEGMR
AQLVRPNTGSLREDLLRIGTNALADVRRNTPVMRGLLIEIERNPALTKAFRTKFVDERKALIDDVLFAAVQRGEIDADAV
NEELWDLLPGYLVFRSLLPVRSPTADTVRTLVDDVIMPSLTRER

Sequences:

>Translated_204_residues
MASDVSTGLTKAARGRQVSQWTPREVELLKVTLRLLQEHGYDRLSVDEVAAESKASKATIYRRWPSKAELVLAAFIEGMR
AQLVRPNTGSLREDLLRIGTNALADVRRNTPVMRGLLIEIERNPALTKAFRTKFVDERKALIDDVLFAAVQRGEIDADAV
NEELWDLLPGYLVFRSLLPVRSPTADTVRTLVDDVIMPSLTRER
>Mature_203_residues
ASDVSTGLTKAARGRQVSQWTPREVELLKVTLRLLQEHGYDRLSVDEVAAESKASKATIYRRWPSKAELVLAAFIEGMRA
QLVRPNTGSLREDLLRIGTNALADVRRNTPVMRGLLIEIERNPALTKAFRTKFVDERKALIDDVLFAAVQRGEIDADAVN
EELWDLLPGYLVFRSLLPVRSPTADTVRTLVDDVIMPSLTRER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22939; Mature: 22808

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDVSTGLTKAARGRQVSQWTPREVELLKVTLRLLQEHGYDRLSVDEVAAESKASKATI
CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
YRRWPSKAELVLAAFIEGMRAQLVRPNTGSLREDLLRIGTNALADVRRNTPVMRGLLIEI
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEE
ERNPALTKAFRTKFVDERKALIDDVLFAAVQRGEIDADAVNEELWDLLPGYLVFRSLLPV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
RSPTADTVRTLVDDVIMPSLTRER
CCCCHHHHHHHHHHHHHCHHHCCC
>Mature Secondary Structure 
ASDVSTGLTKAARGRQVSQWTPREVELLKVTLRLLQEHGYDRLSVDEVAAESKASKATI
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
YRRWPSKAELVLAAFIEGMRAQLVRPNTGSLREDLLRIGTNALADVRRNTPVMRGLLIEI
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEE
ERNPALTKAFRTKFVDERKALIDDVLFAAVQRGEIDADAVNEELWDLLPGYLVFRSLLPV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
RSPTADTVRTLVDDVIMPSLTRER
CCCCHHHHHHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]