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The map label for this gene is 169627978

Identifier: 169627978

GI number: 169627978

Start: 874529

End: 874960

Strand: Direct

Name: 169627978

Synonym: MAB_0879

Alternate gene names: NA

Gene position: 874529-874960 (Clockwise)

Preceding gene: 169627975

Following gene: 169627979

Centisome position: 17.26

GC content: 67.82

Gene sequence:

>432_bases
GTGAGCGACCCAGATGCCCGGTTGGCCAGCGATCTATCGCTTGTTGTGATCCGCCTGGCCCGGCATCTGCGGTTCCGGCG
TGCCGATTCCCCCGTCTCGTTGACGCAGCTGTCGGCACTGGCGACATTGCTGAACGAGGGCGCCATGACCCCGGGCGCGT
TGGCCGCCCGCGAGCGCGTACAGCCGCCGTCGATGACCCGGGTGATTGCCTCGCTGGCCGAGCTTGGGCTGGTGGAGCGG
TCGGCGCATCCGACCGACGGACGCCAAGTGGTTGTCTCACTGTCCGAGGCCGGGGCCGATATCGTGCAGGCCGACCGCAG
TGCGCGCGAGGAATGGCTGCGCGAACACCTGGCGGATTTCACCCCGGACCAACGCGCGGTGTTGCGGCAGGCAACCGACC
TGTTGTCGGCGCTGGTCAACGAAAACGGTTAG

Upstream 100 bases:

>100_bases
TGTCCACTAGATGCGCAGCATACGCGGGCGACGACACCGGCCGGGGGCTTAGTCGGCTCAGTCCCTGTGAAAGCCCTGGA
CGTGCCGTAAGGTTTGGGCC

Downstream 100 bases:

>100_bases
CTGACAATCTCCTTACTCTCTAAAATGACCTTCCGTGGCTGACCGCGGCGGGATATTCGTATCGCTGCGTACCCGTAACT
ACCGGCTGTGGATCAGCGGC

Product: putative HTH-type transcriptional regulator MarR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSDPDARLASDLSLVVIRLARHLRFRRADSPVSLTQLSALATLLNEGAMTPGALAARERVQPPSMTRVIASLAELGLVER
SAHPTDGRQVVVSLSEAGADIVQADRSAREEWLREHLADFTPDQRAVLRQATDLLSALVNENG

Sequences:

>Translated_143_residues
MSDPDARLASDLSLVVIRLARHLRFRRADSPVSLTQLSALATLLNEGAMTPGALAARERVQPPSMTRVIASLAELGLVER
SAHPTDGRQVVVSLSEAGADIVQADRSAREEWLREHLADFTPDQRAVLRQATDLLSALVNENG
>Mature_142_residues
SDPDARLASDLSLVVIRLARHLRFRRADSPVSLTQLSALATLLNEGAMTPGALAARERVQPPSMTRVIASLAELGLVERS
AHPTDGRQVVVSLSEAGADIVQADRSAREEWLREHLADFTPDQRAVLRQATDLLSALVNENG

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 15487; Mature: 15356

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPDARLASDLSLVVIRLARHLRFRRADSPVSLTQLSALATLLNEGAMTPGALAARERV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHC
QPPSMTRVIASLAELGLVERSAHPTDGRQVVVSLSEAGADIVQADRSAREEWLREHLADF
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC
TPDQRAVLRQATDLLSALVNENG
CCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDPDARLASDLSLVVIRLARHLRFRRADSPVSLTQLSALATLLNEGAMTPGALAARERV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHC
QPPSMTRVIASLAELGLVERSAHPTDGRQVVVSLSEAGADIVQADRSAREEWLREHLADF
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC
TPDQRAVLRQATDLLSALVNENG
CCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]