| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is 169627974
Identifier: 169627974
GI number: 169627974
Start: 871169
End: 872836
Strand: Reverse
Name: 169627974
Synonym: MAB_0875c
Alternate gene names: NA
Gene position: 872836-871169 (Counterclockwise)
Preceding gene: 169627976
Following gene: 169627973
Centisome position: 17.23
GC content: 68.05
Gene sequence:
>1668_bases GTGCGGGACGACTACGCGCGGTTCGGGAACCGCCACGGCAGTAGCGACTCCCCGTCTCGCCGCCGCAACCAGGATCCGCG CGATGCCAACTCCCACCCGGGTATGGCCAACTACCCGACGGGCAGCGCCCCGCGGGAACGCCTGCGCGCAAGCAGCTCAT CGAATCGCTATCTCCCCCCGCTCGGCGAGGAGCGCCGTGAGCGGGTGCGCCGCCGGCCCCCGCCCGAGCAGGACCACCCG CAGAAACTGACGGTCACCCGGGTTGCCGCGATGCGCAGCCGCGAGATGGGCTCCCGGATGTACGGGCTGTTCCAGAAGGC CGCCACCGCGGACGGCGCCGATAAGTCGGGCCTCACCGCCCTCACGTATCCGGTGATGGCCAACTTCGCGGTGGACGCCG CGATGGCGGTAGCCCTTGCCAACACACTCTTCTTCGCCGCCGCCACCGCCGAGTCCAAGAGCAAGGTGGCGCTGTATCTG CTGATCACCATCGCACCGTTCGCCGTCATCGCCCCGCTGATCGGCCCCGCGCTGGACCGCCTGCAACATGGACGCCGGGC CGCACTGGCCGCTTCATTTGGATTGCGCACCTTGTTGGCCGTGATCATGATCGCCAACTACGACGGCGCCAGCGGCAGCT TCCCGCCCTGGGTGCTGTATCCCTGTGCGTTGTCAATGCTGGTGCTGTCCAAGTCCTTTGGCGTGCTGCGCGGTGCGGTG ACGCCACGTGTACTGCCCCCGACCATCGACCTGGTGCGTGTCAACTCGCGGCTCACCACCTTTGGCCTGGTCGGCGGAAC CATTGTCGGTGGAGCCATCGCGGCCGGTTGCGAGCTCGCGTTCACCCGGTTATTGCACCTGCCCGGTGCGCTTTTCGTGG TCATCGCGGTCACCGCGGTGGGTGCCTGGGCCTCGATGCGCATCCCCAAGTGGGTGGAGGTAACCGCCGGTGAGGTGCCC ACCACCTTCGGCTATCACGGCGACGACGGCGAGCACCCGACGATTCTGCTACGGCGCTCCCATAAGCAGCCGGAGAAGGT CCGGCAGCCGCTGGGCCGCAACATCATCACCTCGCTCTGGGGCAACAGCACCATCAAGGTGATGGTCGGATTCCTCACCC TGTACCCGGCATTCGTCGCCAAATCTCACGATGCCCACGGCTTCCAGCAGCTCGCCATGCTGGGCATGGTCGGTGCGGCC GCCGGTATCGGCAACTTCGCGGGCAACGCCACCAGTGCCCGACTCAAGCTCGGCCGCCCCGCCCTGCTCGTGGTGCGCTG CGCCAGCGCGGTGACGGTGGTGGCGCTGGCCGCCGCCGTGACCGGAGTCCTGGCGGTGGTGGTGGTCGCGACGCTGGTGA CATCGGCGGTCAGCGCCATCGCGAAGGCCTCGCTGGACGCCTCGTTGCAGGATGATCTGCCGGAAGAATCCCGCGCGTCC GCGTTCGGGCGGTCCGAGGCACTGCTGCAGCTGTCCTGGGTGCTCGGTGGCGCGATCGGCGTGATGATCTACACCGACCT ATGGGTGGGATTCACGGTGATCTCGGCCGTGCTCATCCTCGGCCTGGCCCAGACGCTGGCCAGCTTCCGCGGCGTCTCCC TGATTCCGGGTCTGGGCGGCAACCGCCCGGTGATGGCCGAACAAGAAGGTGGCAAGGTACACGCGTGA
Upstream 100 bases:
>100_bases GGCCGTACGTGCCTGCTCAATACACGTGTACAGGGCGTCGCGGCCGGAGATAGTGATGTCCATCGCTGACCATCTTCTCA CCGTGAGGGACAATCGATGC
Downstream 100 bases:
>100_bases AAGCGAAACTGACGGCGCTGGCCGTCGTCCTGGTGCTCACCGCTGCCGCCATGGTCGGGTTTATCACCTGGCGGGTACGC GGGCACCAGGAGGAGCGACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 555; Mature: 555
Protein sequence:
>555_residues MRDDYARFGNRHGSSDSPSRRRNQDPRDANSHPGMANYPTGSAPRERLRASSSSNRYLPPLGEERRERVRRRPPPEQDHP QKLTVTRVAAMRSREMGSRMYGLFQKAATADGADKSGLTALTYPVMANFAVDAAMAVALANTLFFAAATAESKSKVALYL LITIAPFAVIAPLIGPALDRLQHGRRAALAASFGLRTLLAVIMIANYDGASGSFPPWVLYPCALSMLVLSKSFGVLRGAV TPRVLPPTIDLVRVNSRLTTFGLVGGTIVGGAIAAGCELAFTRLLHLPGALFVVIAVTAVGAWASMRIPKWVEVTAGEVP TTFGYHGDDGEHPTILLRRSHKQPEKVRQPLGRNIITSLWGNSTIKVMVGFLTLYPAFVAKSHDAHGFQQLAMLGMVGAA AGIGNFAGNATSARLKLGRPALLVVRCASAVTVVALAAAVTGVLAVVVVATLVTSAVSAIAKASLDASLQDDLPEESRAS AFGRSEALLQLSWVLGGAIGVMIYTDLWVGFTVISAVLILGLAQTLASFRGVSLIPGLGGNRPVMAEQEGGKVHA
Sequences:
>Translated_555_residues MRDDYARFGNRHGSSDSPSRRRNQDPRDANSHPGMANYPTGSAPRERLRASSSSNRYLPPLGEERRERVRRRPPPEQDHP QKLTVTRVAAMRSREMGSRMYGLFQKAATADGADKSGLTALTYPVMANFAVDAAMAVALANTLFFAAATAESKSKVALYL LITIAPFAVIAPLIGPALDRLQHGRRAALAASFGLRTLLAVIMIANYDGASGSFPPWVLYPCALSMLVLSKSFGVLRGAV TPRVLPPTIDLVRVNSRLTTFGLVGGTIVGGAIAAGCELAFTRLLHLPGALFVVIAVTAVGAWASMRIPKWVEVTAGEVP TTFGYHGDDGEHPTILLRRSHKQPEKVRQPLGRNIITSLWGNSTIKVMVGFLTLYPAFVAKSHDAHGFQQLAMLGMVGAA AGIGNFAGNATSARLKLGRPALLVVRCASAVTVVALAAAVTGVLAVVVVATLVTSAVSAIAKASLDASLQDDLPEESRAS AFGRSEALLQLSWVLGGAIGVMIYTDLWVGFTVISAVLILGLAQTLASFRGVSLIPGLGGNRPVMAEQEGGKVHA >Mature_555_residues MRDDYARFGNRHGSSDSPSRRRNQDPRDANSHPGMANYPTGSAPRERLRASSSSNRYLPPLGEERRERVRRRPPPEQDHP QKLTVTRVAAMRSREMGSRMYGLFQKAATADGADKSGLTALTYPVMANFAVDAAMAVALANTLFFAAATAESKSKVALYL LITIAPFAVIAPLIGPALDRLQHGRRAALAASFGLRTLLAVIMIANYDGASGSFPPWVLYPCALSMLVLSKSFGVLRGAV TPRVLPPTIDLVRVNSRLTTFGLVGGTIVGGAIAAGCELAFTRLLHLPGALFVVIAVTAVGAWASMRIPKWVEVTAGEVP TTFGYHGDDGEHPTILLRRSHKQPEKVRQPLGRNIITSLWGNSTIKVMVGFLTLYPAFVAKSHDAHGFQQLAMLGMVGAA AGIGNFAGNATSARLKLGRPALLVVRCASAVTVVALAAAVTGVLAVVVVATLVTSAVSAIAKASLDASLQDDLPEESRAS AFGRSEALLQLSWVLGGAIGVMIYTDLWVGFTVISAVLILGLAQTLASFRGVSLIPGLGGNRPVMAEQEGGKVHA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae ML2143 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 58643; Mature: 58643
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDDYARFGNRHGSSDSPSRRRNQDPRDANSHPGMANYPTGSAPRERLRASSSSNRYLPP CCCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC LGEERRERVRRRPPPEQDHPQKLTVTRVAAMRSREMGSRMYGLFQKAATADGADKSGLTA CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE LTYPVMANFAVDAAMAVALANTLFFAAATAESKSKVALYLLITIAPFAVIAPLIGPALDR EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH LQHGRRAALAASFGLRTLLAVIMIANYDGASGSFPPWVLYPCALSMLVLSKSFGVLRGAV HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC TPRVLPPTIDLVRVNSRLTTFGLVGGTIVGGAIAAGCELAFTRLLHLPGALFVVIAVTAV CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH GAWASMRIPKWVEVTAGEVPTTFGYHGDDGEHPTILLRRSHKQPEKVRQPLGRNIITSLW HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC GNSTIKVMVGFLTLYPAFVAKSHDAHGFQQLAMLGMVGAAAGIGNFAGNATSARLKLGRP CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC ALLVVRCASAVTVVALAAAVTGVLAVVVVATLVTSAVSAIAKASLDASLQDDLPEESRAS CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHH AFGRSEALLQLSWVLGGAIGVMIYTDLWVGFTVISAVLILGLAQTLASFRGVSLIPGLGG HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCC NRPVMAEQEGGKVHA CCCEEECCCCCCCCC >Mature Secondary Structure MRDDYARFGNRHGSSDSPSRRRNQDPRDANSHPGMANYPTGSAPRERLRASSSSNRYLPP CCCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC LGEERRERVRRRPPPEQDHPQKLTVTRVAAMRSREMGSRMYGLFQKAATADGADKSGLTA CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE LTYPVMANFAVDAAMAVALANTLFFAAATAESKSKVALYLLITIAPFAVIAPLIGPALDR EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH LQHGRRAALAASFGLRTLLAVIMIANYDGASGSFPPWVLYPCALSMLVLSKSFGVLRGAV HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC TPRVLPPTIDLVRVNSRLTTFGLVGGTIVGGAIAAGCELAFTRLLHLPGALFVVIAVTAV CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH GAWASMRIPKWVEVTAGEVPTTFGYHGDDGEHPTILLRRSHKQPEKVRQPLGRNIITSLW HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC GNSTIKVMVGFLTLYPAFVAKSHDAHGFQQLAMLGMVGAAAGIGNFAGNATSARLKLGRP CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC ALLVVRCASAVTVVALAAAVTGVLAVVVVATLVTSAVSAIAKASLDASLQDDLPEESRAS CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHH AFGRSEALLQLSWVLGGAIGVMIYTDLWVGFTVISAVLILGLAQTLASFRGVSLIPGLGG HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCC NRPVMAEQEGGKVHA CCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]