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The map label for this gene is ydfD [H]

Identifier: 169627910

GI number: 169627910

Start: 801331

End: 802755

Strand: Reverse

Name: ydfD [H]

Synonym: MAB_0810c

Alternate gene names: 169627910

Gene position: 802755-801331 (Counterclockwise)

Preceding gene: 169627913

Following gene: 169627909

Centisome position: 15.84

GC content: 67.37

Gene sequence:

>1425_bases
GTGGCTGAGCAGGTGCGTGGCGAGATCCTGGCACTAGCGCCCGGTAGTCGCATTGCAAGCCACCGAGAGCTGGTCCGGCG
CTTTCATGTCAGCGCGAGCACCGTCGCCGATGCGCTATCGCTGCTGGCGCAGCAGGGCCTGATCGAATCGCGGCCCGGGG
CCGGATCCTTCCGCACCGAGAATCGCCCGGTGCCCCGGCCGGGCGACACCTCATGGCAAGAGACGGCACTGGAGCTCGGC
CCACAAGAAGAATCCCCACCCGGGATCCGGCGCGTGTTCGATGCCCCGGGGCTGCTGAGCACCTTGGCGCCCAGCGCCGC
CGACGTCGTCGATCTCAACGGCGGGTACCTGCATCCGGACTTGCAACCACTGTCGATGCTCACCGCGTCGCTGGCCCGCG
CCGCGCGCCGGCCAGAGGCATGGGACCGTCCTCCTCCCGGCGGACTTCCCGAGCTCCGCGATTGGTTCGCCGCCGAACTC
GGCGGCGGGCTTGGCCGCCAGGACATTCTGATCTGCGGCGCGGGCCAGAGCGCACTGTCCACTTCCCTGCGTGCACTGTG
CCAGCCGGGTGACCCGGTACTACTGGAATCACCGTGCTATCCCGGCGCGACAGCCGCGGCACGTGCGGCGGGTCTGCGGC
CCATCGCTATTCCGTTGGACATCAATGGGATTCGACCGGACCGTCTCAACGAGGCACTCTCACACACCAACGCTCGCGCG
ATCGTCGTGCAGCCTCTCTTCCAGAACCCAACGGGTGCCAGCCTCACACCGCAACGCCGCGACGAACTCCGCGAGATAGC
CCGTCGGCATGGAGCATTCTTGATCGAGGACGACTTCGCCCGGTACATGGCCCACGATGACGGCAAACCGCTTGTGCCGC
CATTGATCTCCGACGATCCCGACGGCACCGTGGTGCACATACGCTCGATGACCAAGGTGACGTCGCCCAACTTGCGGGTG
GGAGCCATCGCCGCACGCGGGCCCGTCATGGCCCGTCTGCGCGCGGCGTCGGTCATCGACACCATGCTGGTTCCCGCACC
ACTGCAATACACCACCCTGGAGGTGGTGACCTCGCCGTCGTGGCGACGTGGCCTGGCGACTCTCGGCAAGACTCTCAAAC
ACCGGCGCGCGACCGCCCGCGACGCCATCGCCGCGGCCTTCCCGACCGAACTCACCCACTACCCGCGCGGTGGATATCAC
CTCTGGGTGTCGCTGCCCCCGCAGTCCGACAGTCGGCAGTTCGCCGCCGAGGCACTCACCCGGGGGGTGGCGATCACCCC
GGGAGACAACTACTTCACCAGCGGCGGCGGCAGGCCACATATCCGGATCAGCTATGTCGCCGCCCCGTCTCCCGCCGATA
TTTCTGAGGGAATACGACGCCTGGAACCTTTGGTCAGCAAATATATTGCCGAGGGCGCCGGCTAG

Upstream 100 bases:

>100_bases
GAGGGCCGCCAGCCCGGTGCCCTTGGATAGTGACGGCGTTCCCGCCTGCACAGTAGCGCTACTATTGTATCTCATGGATG
ATGGTAGCAGTCATCGCCAG

Downstream 100 bases:

>100_bases
TAGCCCAATGTGTGCACACCACACAACGCGGCACGACGGGCGCCGAACTCTGTGAGCTAGGTGGCCGAAAGCTGTGAGAT
CGCTGCCGCTAATGTAAATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MAEQVRGEILALAPGSRIASHRELVRRFHVSASTVADALSLLAQQGLIESRPGAGSFRTENRPVPRPGDTSWQETALELG
PQEESPPGIRRVFDAPGLLSTLAPSAADVVDLNGGYLHPDLQPLSMLTASLARAARRPEAWDRPPPGGLPELRDWFAAEL
GGGLGRQDILICGAGQSALSTSLRALCQPGDPVLLESPCYPGATAAARAAGLRPIAIPLDINGIRPDRLNEALSHTNARA
IVVQPLFQNPTGASLTPQRRDELREIARRHGAFLIEDDFARYMAHDDGKPLVPPLISDDPDGTVVHIRSMTKVTSPNLRV
GAIAARGPVMARLRAASVIDTMLVPAPLQYTTLEVVTSPSWRRGLATLGKTLKHRRATARDAIAAAFPTELTHYPRGGYH
LWVSLPPQSDSRQFAAEALTRGVAITPGDNYFTSGGGRPHIRISYVAAPSPADISEGIRRLEPLVSKYIAEGAG

Sequences:

>Translated_474_residues
MAEQVRGEILALAPGSRIASHRELVRRFHVSASTVADALSLLAQQGLIESRPGAGSFRTENRPVPRPGDTSWQETALELG
PQEESPPGIRRVFDAPGLLSTLAPSAADVVDLNGGYLHPDLQPLSMLTASLARAARRPEAWDRPPPGGLPELRDWFAAEL
GGGLGRQDILICGAGQSALSTSLRALCQPGDPVLLESPCYPGATAAARAAGLRPIAIPLDINGIRPDRLNEALSHTNARA
IVVQPLFQNPTGASLTPQRRDELREIARRHGAFLIEDDFARYMAHDDGKPLVPPLISDDPDGTVVHIRSMTKVTSPNLRV
GAIAARGPVMARLRAASVIDTMLVPAPLQYTTLEVVTSPSWRRGLATLGKTLKHRRATARDAIAAAFPTELTHYPRGGYH
LWVSLPPQSDSRQFAAEALTRGVAITPGDNYFTSGGGRPHIRISYVAAPSPADISEGIRRLEPLVSKYIAEGAG
>Mature_473_residues
AEQVRGEILALAPGSRIASHRELVRRFHVSASTVADALSLLAQQGLIESRPGAGSFRTENRPVPRPGDTSWQETALELGP
QEESPPGIRRVFDAPGLLSTLAPSAADVVDLNGGYLHPDLQPLSMLTASLARAARRPEAWDRPPPGGLPELRDWFAAELG
GGLGRQDILICGAGQSALSTSLRALCQPGDPVLLESPCYPGATAAARAAGLRPIAIPLDINGIRPDRLNEALSHTNARAI
VVQPLFQNPTGASLTPQRRDELREIARRHGAFLIEDDFARYMAHDDGKPLVPPLISDDPDGTVVHIRSMTKVTSPNLRVG
AIAARGPVMARLRAASVIDTMLVPAPLQYTTLEVVTSPSWRRGLATLGKTLKHRRATARDAIAAAFPTELTHYPRGGYHL
WVSLPPQSDSRQFAAEALTRGVAITPGDNYFTSGGGRPHIRISYVAAPSPADISEGIRRLEPLVSKYIAEGAG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=396, Percent_Identity=26.010101010101, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI33469970, Length=396, Percent_Identity=26.010101010101, Blast_Score=129, Evalue=5e-30,
Organism=Escherichia coli, GI1787710, Length=456, Percent_Identity=29.3859649122807, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1790797, Length=464, Percent_Identity=26.5086206896552, Blast_Score=128, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6321236, Length=359, Percent_Identity=23.3983286908078, Blast_Score=94, Evalue=3e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50699; Mature: 50568

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQVRGEILALAPGSRIASHRELVRRFHVSASTVADALSLLAQQGLIESRPGAGSFRTE
CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
NRPVPRPGDTSWQETALELGPQEESPPGIRRVFDAPGLLSTLAPSAADVVDLNGGYLHPD
CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHCCCCCCEEECCCCEECCC
LQPLSMLTASLARAARRPEAWDRPPPGGLPELRDWFAAELGGGLGRQDILICGAGQSALS
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
TSLRALCQPGDPVLLESPCYPGATAAARAAGLRPIAIPLDINGIRPDRLNEALSHTNARA
HHHHHHCCCCCCEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEE
IVVQPLFQNPTGASLTPQRRDELREIARRHGAFLIEDDFARYMAHDDGKPLVPPLISDDP
EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCC
DGTVVHIRSMTKVTSPNLRVGAIAARGPVMARLRAASVIDTMLVPAPLQYTTLEVVTSPS
CCCEEEEEEHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
WRRGLATLGKTLKHRRATARDAIAAAFPTELTHYPRGGYHLWVSLPPQSDSRQFAAEALT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH
RGVAITPGDNYFTSGGGRPHIRISYVAAPSPADISEGIRRLEPLVSKYIAEGAG
CCEEECCCCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AEQVRGEILALAPGSRIASHRELVRRFHVSASTVADALSLLAQQGLIESRPGAGSFRTE
CCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
NRPVPRPGDTSWQETALELGPQEESPPGIRRVFDAPGLLSTLAPSAADVVDLNGGYLHPD
CCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHCCCCCCEEECCCCEECCC
LQPLSMLTASLARAARRPEAWDRPPPGGLPELRDWFAAELGGGLGRQDILICGAGQSALS
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
TSLRALCQPGDPVLLESPCYPGATAAARAAGLRPIAIPLDINGIRPDRLNEALSHTNARA
HHHHHHCCCCCCEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEE
IVVQPLFQNPTGASLTPQRRDELREIARRHGAFLIEDDFARYMAHDDGKPLVPPLISDDP
EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCC
DGTVVHIRSMTKVTSPNLRVGAIAARGPVMARLRAASVIDTMLVPAPLQYTTLEVVTSPS
CCCEEEEEEHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
WRRGLATLGKTLKHRRATARDAIAAAFPTELTHYPRGGYHLWVSLPPQSDSRQFAAEALT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH
RGVAITPGDNYFTSGGGRPHIRISYVAAPSPADISEGIRRLEPLVSKYIAEGAG
CCEEECCCCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]