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The map label for this gene is alkR [H]

Identifier: 169627868

GI number: 169627868

Start: 766127

End: 767047

Strand: Reverse

Name: alkR [H]

Synonym: MAB_0767c

Alternate gene names: 169627868

Gene position: 767047-766127 (Counterclockwise)

Preceding gene: 169627870

Following gene: 169627865

Centisome position: 15.14

GC content: 65.26

Gene sequence:

>921_bases
ATGATCCATAATCCAGATTATTTTGCCGATCAGCCAAAATCTCTCAGCTGGCCCACAGGGTCGCCGAGTATCGACGCCTT
CTCCGGGATCCTGTCTGCCATTGGGCTGCGCGGTGAATCCGCACTGCGTTGCTCGGCCGAGCTCCCGTTTGACGTCTCCG
TACCCGCGAACGAGCGTGTGCTGCATATCGCCGAGACGGCCGGGCTTCGTGTGTATGTCGACGGGAATCCGGTGTGCGTG
CTTGCTGCCGGAGACATGGTGCTCATGGCGCGCGGCACCGCGCATCGGCTCTCCGGAGCCCAGCCACACGGCGAGCCCGC
GGGCACCCTGCACTGGGTCAGCGGGAGGTTCACGGCGGAGCGTAAGGCCGCCGACCCGCTGCTCTCGGTGTTGCCTCCCG
CCATCATCATTCAAGCCGCTCGGCCCGGACACGAGTGGTTGCCGCTCTCACTTCAGCTCATCCTGGCCGAGATCCTGACG
CCCAGTCCGGGCTCGTGGGTGATGATTTCGCGGATCCTGGACTTGCTGTTTATCCACGCCGTGCGCGAATGGTCAAGTTC
CAGTCACGCCGAGCCCGGGTGGCTTACGGCCGCAATGGATCCGCGTCTGGCGCCCGTGCTCACCGCGATACATAACAACC
TGGAGCACCCCTGGTCGATCGCGGAGCTCGCCCAGCATGCCCGGCAATCGCGCTCGGCCTTCACGCAGAGATTCACCGAG
CTATTGGGCCAGCCGCCTGCCGCCTATATCGGCGAGCGGCGCCTCGACCGTGCCGCGCATCTGCTGCGCTCCACCACCGA
CCCGGTGCGCCAGATCGGGCGAGCCGTCGGATACACATCCGATGCCGCGTTCAGCCGCGCGTTTCAGCGCCGATTCGGTG
AACCACCACTGCGTTGGCGTACACACCACCGGTCCGGATGA

Upstream 100 bases:

>100_bases
TCAGTAGATGTCGGATGAATCATCCCGTTGCGCCCAGGGACTGCGGCACTCTTGACTTCCAGGGATCACACCAACATATT
TGGATGATGAGGCAAGTTAA

Downstream 100 bases:

>100_bases
CAAAGGTCACCGACTACCCCTGCGGCTCACCACAATTCCTGCGATCACGATCGCCCCGCCGAGCGGCTCGTGCCAGCCGA
TGTGCTCACCCAACAGCAAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIHNPDYFADQPKSLSWPTGSPSIDAFSGILSAIGLRGESALRCSAELPFDVSVPANERVLHIAETAGLRVYVDGNPVCV
LAAGDMVLMARGTAHRLSGAQPHGEPAGTLHWVSGRFTAERKAADPLLSVLPPAIIIQAARPGHEWLPLSLQLILAEILT
PSPGSWVMISRILDLLFIHAVREWSSSSHAEPGWLTAAMDPRLAPVLTAIHNNLEHPWSIAELAQHARQSRSAFTQRFTE
LLGQPPAAYIGERRLDRAAHLLRSTTDPVRQIGRAVGYTSDAAFSRAFQRRFGEPPLRWRTHHRSG

Sequences:

>Translated_306_residues
MIHNPDYFADQPKSLSWPTGSPSIDAFSGILSAIGLRGESALRCSAELPFDVSVPANERVLHIAETAGLRVYVDGNPVCV
LAAGDMVLMARGTAHRLSGAQPHGEPAGTLHWVSGRFTAERKAADPLLSVLPPAIIIQAARPGHEWLPLSLQLILAEILT
PSPGSWVMISRILDLLFIHAVREWSSSSHAEPGWLTAAMDPRLAPVLTAIHNNLEHPWSIAELAQHARQSRSAFTQRFTE
LLGQPPAAYIGERRLDRAAHLLRSTTDPVRQIGRAVGYTSDAAFSRAFQRRFGEPPLRWRTHHRSG
>Mature_306_residues
MIHNPDYFADQPKSLSWPTGSPSIDAFSGILSAIGLRGESALRCSAELPFDVSVPANERVLHIAETAGLRVYVDGNPVCV
LAAGDMVLMARGTAHRLSGAQPHGEPAGTLHWVSGRFTAERKAADPLLSVLPPAIIIQAARPGHEWLPLSLQLILAEILT
PSPGSWVMISRILDLLFIHAVREWSSSSHAEPGWLTAAMDPRLAPVLTAIHNNLEHPWSIAELAQHARQSRSAFTQRFTE
LLGQPPAAYIGERRLDRAAHLLRSTTDPVRQIGRAVGYTSDAAFSRAFQRRFGEPPLRWRTHHRSG

Specific function: This protein activates the expression of the alkane 1- monooxygenase AlkM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=229, Percent_Identity=30.5676855895196, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33481; Mature: 33481

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHNPDYFADQPKSLSWPTGSPSIDAFSGILSAIGLRGESALRCSAELPFDVSVPANERV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCEEEECCCCCCE
LHIAETAGLRVYVDGNPVCVLAAGDMVLMARGTAHRLSGAQPHGEPAGTLHWVSGRFTAE
EEEEECCCEEEEECCCCEEEEEECCEEEEECCCHHHCCCCCCCCCCCCEEEEECCCCCHH
RKAADPLLSVLPPAIIIQAARPGHEWLPLSLQLILAEILTPSPGSWVMISRILDLLFIHA
HHHHHHHHHHCCHHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
VREWSSSSHAEPGWLTAAMDPRLAPVLTAIHNNLEHPWSIAELAQHARQSRSAFTQRFTE
HHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLGQPPAAYIGERRLDRAAHLLRSTTDPVRQIGRAVGYTSDAAFSRAFQRRFGEPPLRWR
HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
THHRSG
CCCCCC
>Mature Secondary Structure
MIHNPDYFADQPKSLSWPTGSPSIDAFSGILSAIGLRGESALRCSAELPFDVSVPANERV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCEEEECCCCCCE
LHIAETAGLRVYVDGNPVCVLAAGDMVLMARGTAHRLSGAQPHGEPAGTLHWVSGRFTAE
EEEEECCCEEEEECCCCEEEEEECCEEEEECCCHHHCCCCCCCCCCCCEEEEECCCCCHH
RKAADPLLSVLPPAIIIQAARPGHEWLPLSLQLILAEILTPSPGSWVMISRILDLLFIHA
HHHHHHHHHHCCHHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
VREWSSSSHAEPGWLTAAMDPRLAPVLTAIHNNLEHPWSIAELAQHARQSRSAFTQRFTE
HHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLGQPPAAYIGERRLDRAAHLLRSTTDPVRQIGRAVGYTSDAAFSRAFQRRFGEPPLRWR
HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
THHRSG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]