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The map label for this gene is ydcN [C]

Identifier: 169627870

GI number: 169627870

Start: 767907

End: 768464

Strand: Reverse

Name: ydcN [C]

Synonym: MAB_0769c

Alternate gene names: 169627870

Gene position: 768464-767907 (Counterclockwise)

Preceding gene: 169627872

Following gene: 169627868

Centisome position: 15.17

GC content: 67.56

Gene sequence:

>558_bases
GTGGACAACGACCAATCGGCCCCTGCAGAGGTCGGCGCCCGGCTACGCCGACTCCGCACAGAGGCAGGACTGTCCCTCGC
AGAATTGGCGACGCGAAGCGGCGTCGGCAAGGGCAGCATCTCGGAGTTGGAGAACGGACGTCGCACGGCCCGCCTGGACA
CCCTGTTCGCGTTGACCAAAGCACTCGGCGCTCCGTTGAGCGCAGCCGTCGGCGTCTCGCCTCCCGCCGACGGACCGTCG
GTGCACGGTCAGGCCGTACACGCCGTGTCACTGAGCGGGTGGCAGACCGACGACGGCTACGTCGAGGTCTACCGGATCAC
CGTCGAGACCACCACTCAACACTCTCCGGCGCACGCTACCGGGGTACGTGAAACGATCACCGTGGTTGCGGGAACGCTCG
AGGCGGGGCCGCTGGGCGACCCACAGATCGCGGCCGCCGGTGAAACCATGTGCTTCCCAGGGAATGTCCCTCACGTCTAC
CGTGCCGTGAACGGCCCCGCCGAAGCGGTCCTGACGATGCATTACCCGCCCGGCATCACGACACCCGTCGCTCAGTGA

Upstream 100 bases:

>100_bases
GGCAAGGGTGGCCTGCAATTGTCGGCTGGTTTCGGGCAATACTTCGGTCATCAGGGAGCCTTCCTCTAGGGTTCTGTAAA
CAGAACTCTAGAGTGGTCCC

Downstream 100 bases:

>100_bases
CAGCGCACCGCCACCGGGGGCACCGGCGGCCGCAACCGACGCCCCCGGGCCTCGTTGCTACGCGATGTCCCCAGCGGCCT
CGGCAATGAGATCGGCGATG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Helix-Turn-Helix Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Cro/CI Family Protein; Transcriptional Regulator Xre Family; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MDNDQSAPAEVGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPLSAAVGVSPPADGPS
VHGQAVHAVSLSGWQTDDGYVEVYRITVETTTQHSPAHATGVRETITVVAGTLEAGPLGDPQIAAAGETMCFPGNVPHVY
RAVNGPAEAVLTMHYPPGITTPVAQ

Sequences:

>Translated_185_residues
MDNDQSAPAEVGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPLSAAVGVSPPADGPS
VHGQAVHAVSLSGWQTDDGYVEVYRITVETTTQHSPAHATGVRETITVVAGTLEAGPLGDPQIAAAGETMCFPGNVPHVY
RAVNGPAEAVLTMHYPPGITTPVAQ
>Mature_185_residues
MDNDQSAPAEVGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPLSAAVGVSPPADGPS
VHGQAVHAVSLSGWQTDDGYVEVYRITVETTTQHSPAHATGVRETITVVAGTLEAGPLGDPQIAAAGETMCFPGNVPHVY
RAVNGPAEAVLTMHYPPGITTPVAQ

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=169, Percent_Identity=28.4023668639053, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19071; Mature: 19071

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNDQSAPAEVGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTK
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHH
ALGAPLSAAVGVSPPADGPSVHGQAVHAVSLSGWQTDDGYVEVYRITVETTTQHSPAHAT
HHCCCCHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCHH
GVRETITVVAGTLEAGPLGDPQIAAAGETMCFPGNVPHVYRAVNGPAEAVLTMHYPPGIT
HHHHHHHHEEECCCCCCCCCCCEEECCCEEECCCCCCHHHHHCCCCCCEEEEEECCCCCC
TPVAQ
CCCCC
>Mature Secondary Structure
MDNDQSAPAEVGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTK
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHH
ALGAPLSAAVGVSPPADGPSVHGQAVHAVSLSGWQTDDGYVEVYRITVETTTQHSPAHAT
HHCCCCHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCHH
GVRETITVVAGTLEAGPLGDPQIAAAGETMCFPGNVPHVYRAVNGPAEAVLTMHYPPGIT
HHHHHHHHEEECCCCCCCCCCCEEECCCEEECCCCCCHHHHHCCCCCCEEEEEECCCCCC
TPVAQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA