| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
Click here to switch to the map view.
The map label for this gene is msrR [H]
Identifier: 169627853
GI number: 169627853
Start: 751927
End: 754212
Strand: Reverse
Name: msrR [H]
Synonym: MAB_0752c
Alternate gene names: 169627853
Gene position: 754212-751927 (Counterclockwise)
Preceding gene: 169627854
Following gene: 169627852
Centisome position: 14.88
GC content: 65.7
Gene sequence:
>2286_bases ATGGGTGATGGCCCAAACGCCACTCCTGCCCAACCACGCGCGTATGGCTCGGCCCCCTGGGAACGCGCGATCGAACCCGT TGGCAGTCATCCTGACATCGACGTGGCGCCAGAACCATCCAACACACCGTGGACGCCACCGCCGGCTCTCAATCACTCAT TGCCCGACCCCACCGACGACGAGTGGACGCGACGGCTCGAGACCGAACAATCCCTACGCGAACCGCGGCGGGCGGTGCCC GAGGTACCGGCATCCCGGCCCGCCCGACCGGCCCCCAACGCAACGGCACCCACGGCCCCGCAGCCGCCGGCGCCCTCCGC ACACGAGACCGGATCGCACTCGTTGTCGGTCGCCGATCTGCTGGCCCGTGAGGGCGCCAACGGCAGCCGTCGTTCACGTC GGCACGCGCGCACCCAGGAGTCGGACGACTACGCAGAGGAGCCTGCTCCAGCGTCGTCCGCCGACGACAGCCACACAGAC GTTCTCCCACAGGTGCACGAAGCCGCACCGCAGCGTGCTCAGTACACCGATGGGCCGGCCGACGAGCACCCGCCGTACGT GGACTACCCCGATGACGCGCCCCTCTACGACAAGGCCGCCGCGCGTCGGGTTCGGGCATCGAATCTGGACGACAACATCG ACACCCGCGCCATTCCCGTCCGGGTGGGCAACCCGGACGCCGCGGTCCGAGAAGAAGAACCGAAACGCTCACGGCGGCCC ATCTACCTAGGACGCTCGATCGCCGCCGTCGTCGCGGTGTGTTCACTCACCGTGACCGGCGGTGCGTGGCAGTGGAGCAA CGTCAAGAACAACAGGCTCAATCACGTTGAGGCGCTGGACCCCAACTCGCGCGACATCCGCGATCCCAACGCCCAGTACG GCGACGAGAACTTCCTCATCATCGGCGTCGACACCCGTGCCGGCGCCAACAGCGCCATGGGCGCCGGCGACACCTCAGAC GCTGAGGGCACACGCTCGGACACCATGATGTTGGTCAACATCCCGGCCAACCGTAAGCGCGTCGCGGTGGTGTCCTTCCC CCGCGATCTGGCCATCCAGCCGACACTGTGCGAGGTCTGGAATGAGGACACCAAGTCCTATGGGCCCGATAAGGCCTACA CCGAGACCAAACTCAACTCGGCGTTCGCCTTCGGCGGCCCCAAGTGCCTGGTCAAGGTCATCCAGAAGATGTCGGGACTG AACATCAACCGCTTCCTCGGCGTGGATTTCGCCGGATTCTCCAAGATGGTCGACGCACTCGGTGGGGTCGAGGTGTGCAC ACCCACACCGATCGAGGACTACGAGTTGGGCACGGTGCTGCAAAACGCCGGCCGCCAAACGATCGACGGCCACACCGCCC TGCAGTATGTGCGGGCCCGCCAGGTCACCACCGAATACAACGGCGACTACGGACGCATCAAGCGCCAGCAGTTGTTCCTG TCCTCCTTGCTGCGTTCGATGATTTCGCACAACACCTTCTTCTCGCTGAGCAAGCTCAACAACGTGGTGAACACCTTCAT CGACGACTCCTATGTCGACAACATCAGGACGAAAGACCTTGTGGACCTTGGTCAGTCGCTTCAGGATGTGAAGGCTGGCC GAATCACCTTCCTGACGGTGCCCACCGACGGCACCGACTCCGAGGGCAACGAGACACCGCGCACCACCGACATCCGGAAG ATCTTCGACGCCATCATCAATGACGACCCGCTGCCCGGCGAGTTGCTGCCCGATGGCACCCGTGTTCCCATGCCAGGCAC CACCACTCAGGACACCACCCTGGCCGCCAGCGAGCACGGAGCCGCCAGCGAGCTAGGCGAAACATCCACTGCCCCACCGA CTCCCGCAGCAACACCCACCGAGCAGGTCGACCTGGTGACCACCGAACCCAGCGAGATCAACGTGCACGTGTCCAACAGC ACGGGCCAAACCGGCCTGGCGGCGTCGGCGGCCAGCCAGCTGAGCAACTACGGCTTTGGCATCACCACCACCGACGACTA CCCCTCGGCACTGCCCACCACCACCGTCTTCTTCTCGCCGGGCCACGAGCAACAGGCCGCGACGGTTGCCGCCTCATTCG GCGGAGCCAAGCTGCAGCGGATCACCGGAGCCCAAACCACGGTGCGGGTGGTGCTCGGCAGCGACTACGCGTCTACCGCG AACTTGCAGGCTCCGCCCGCGGCGGGTTCAACCGTCCCGCTGCAGCTGTCCTCGGGCGCAATGGCCCCCACCGAGCTGCC GATGGACCTGACGGTCGTGAACGCCGGCGACACTAGCTGCGGATAG
Upstream 100 bases:
>100_bases TCAGTAGCATGTGACGACGACCGTGCCCCGGGCACGGCGTTATCTGCTGCCGGTGTGCCGTGAACTTGCAACTGTCCAGA CGTTTTAAGCGAGGTTGAAC
Downstream 100 bases:
>100_bases TCCGACAATTTAGACGCTGCTCGCAGTTTCTTACGCGGACCCTGTAGTGGCATTCACTCGCCGTTCACACCAGGTCCATG ACTCGACGGCGACGGGTCCG
Product: putative transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 761; Mature: 760
Protein sequence:
>761_residues MGDGPNATPAQPRAYGSAPWERAIEPVGSHPDIDVAPEPSNTPWTPPPALNHSLPDPTDDEWTRRLETEQSLREPRRAVP EVPASRPARPAPNATAPTAPQPPAPSAHETGSHSLSVADLLAREGANGSRRSRRHARTQESDDYAEEPAPASSADDSHTD VLPQVHEAAPQRAQYTDGPADEHPPYVDYPDDAPLYDKAAARRVRASNLDDNIDTRAIPVRVGNPDAAVREEEPKRSRRP IYLGRSIAAVVAVCSLTVTGGAWQWSNVKNNRLNHVEALDPNSRDIRDPNAQYGDENFLIIGVDTRAGANSAMGAGDTSD AEGTRSDTMMLVNIPANRKRVAVVSFPRDLAIQPTLCEVWNEDTKSYGPDKAYTETKLNSAFAFGGPKCLVKVIQKMSGL NINRFLGVDFAGFSKMVDALGGVEVCTPTPIEDYELGTVLQNAGRQTIDGHTALQYVRARQVTTEYNGDYGRIKRQQLFL SSLLRSMISHNTFFSLSKLNNVVNTFIDDSYVDNIRTKDLVDLGQSLQDVKAGRITFLTVPTDGTDSEGNETPRTTDIRK IFDAIINDDPLPGELLPDGTRVPMPGTTTQDTTLAASEHGAASELGETSTAPPTPAATPTEQVDLVTTEPSEINVHVSNS TGQTGLAASAASQLSNYGFGITTTDDYPSALPTTTVFFSPGHEQQAATVAASFGGAKLQRITGAQTTVRVVLGSDYASTA NLQAPPAAGSTVPLQLSSGAMAPTELPMDLTVVNAGDTSCG
Sequences:
>Translated_761_residues MGDGPNATPAQPRAYGSAPWERAIEPVGSHPDIDVAPEPSNTPWTPPPALNHSLPDPTDDEWTRRLETEQSLREPRRAVP EVPASRPARPAPNATAPTAPQPPAPSAHETGSHSLSVADLLAREGANGSRRSRRHARTQESDDYAEEPAPASSADDSHTD VLPQVHEAAPQRAQYTDGPADEHPPYVDYPDDAPLYDKAAARRVRASNLDDNIDTRAIPVRVGNPDAAVREEEPKRSRRP IYLGRSIAAVVAVCSLTVTGGAWQWSNVKNNRLNHVEALDPNSRDIRDPNAQYGDENFLIIGVDTRAGANSAMGAGDTSD AEGTRSDTMMLVNIPANRKRVAVVSFPRDLAIQPTLCEVWNEDTKSYGPDKAYTETKLNSAFAFGGPKCLVKVIQKMSGL NINRFLGVDFAGFSKMVDALGGVEVCTPTPIEDYELGTVLQNAGRQTIDGHTALQYVRARQVTTEYNGDYGRIKRQQLFL SSLLRSMISHNTFFSLSKLNNVVNTFIDDSYVDNIRTKDLVDLGQSLQDVKAGRITFLTVPTDGTDSEGNETPRTTDIRK IFDAIINDDPLPGELLPDGTRVPMPGTTTQDTTLAASEHGAASELGETSTAPPTPAATPTEQVDLVTTEPSEINVHVSNS TGQTGLAASAASQLSNYGFGITTTDDYPSALPTTTVFFSPGHEQQAATVAASFGGAKLQRITGAQTTVRVVLGSDYASTA NLQAPPAAGSTVPLQLSSGAMAPTELPMDLTVVNAGDTSCG >Mature_760_residues GDGPNATPAQPRAYGSAPWERAIEPVGSHPDIDVAPEPSNTPWTPPPALNHSLPDPTDDEWTRRLETEQSLREPRRAVPE VPASRPARPAPNATAPTAPQPPAPSAHETGSHSLSVADLLAREGANGSRRSRRHARTQESDDYAEEPAPASSADDSHTDV LPQVHEAAPQRAQYTDGPADEHPPYVDYPDDAPLYDKAAARRVRASNLDDNIDTRAIPVRVGNPDAAVREEEPKRSRRPI YLGRSIAAVVAVCSLTVTGGAWQWSNVKNNRLNHVEALDPNSRDIRDPNAQYGDENFLIIGVDTRAGANSAMGAGDTSDA EGTRSDTMMLVNIPANRKRVAVVSFPRDLAIQPTLCEVWNEDTKSYGPDKAYTETKLNSAFAFGGPKCLVKVIQKMSGLN INRFLGVDFAGFSKMVDALGGVEVCTPTPIEDYELGTVLQNAGRQTIDGHTALQYVRARQVTTEYNGDYGRIKRQQLFLS SLLRSMISHNTFFSLSKLNNVVNTFIDDSYVDNIRTKDLVDLGQSLQDVKAGRITFLTVPTDGTDSEGNETPRTTDIRKI FDAIINDDPLPGELLPDGTRVPMPGTTTQDTTLAASEHGAASELGETSTAPPTPAATPTEQVDLVTTEPSEINVHVSNST GQTGLAASAASQLSNYGFGITTTDDYPSALPTTTVFFSPGHEQQAATVAASFGGAKLQRITGAQTTVRVVLGSDYASTAN LQAPPAAGSTVPLQLSSGAMAPTELPMDLTVVNAGDTSCG
Specific function: Involved in sarA attenuation. Affects resistance to oxacillin and teicoplanin, as well as the synthesis of virulence factors [H]
COG id: COG1316
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004474 [H]
Pfam domain/function: PF03816 LytR_cpsA_psr [H]
EC number: NA
Molecular weight: Translated: 81311; Mature: 81180
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDGPNATPAQPRAYGSAPWERAIEPVGSHPDIDVAPEPSNTPWTPPPALNHSLPDPTDD CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH EWTRRLETEQSLREPRRAVPEVPASRPARPAPNATAPTAPQPPAPSAHETGSHSLSVADL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH LAREGANGSRRSRRHARTQESDDYAEEPAPASSADDSHTDVLPQVHEAAPQRAQYTDGPA HHHCCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC DEHPPYVDYPDDAPLYDKAAARRVRASNLDDNIDTRAIPVRVGNPDAAVREEEPKRSRRP CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHCCC IYLGRSIAAVVAVCSLTVTGGAWQWSNVKNNRLNHVEALDPNSRDIRDPNAQYGDENFLI EEECHHHHHHHHHHHHEEECCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEE IGVDTRAGANSAMGAGDTSDAEGTRSDTMMLVNIPANRKRVAVVSFPRDLAIQPTLCEVW EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHH NEDTKSYGPDKAYTETKLNSAFAFGGPKCLVKVIQKMSGLNINRFLGVDFAGFSKMVDAL CCHHHCCCCCCHHHHHHCCCEECCCCHHHHHHHHHHHHCCCCHHEECCCHHHHHHHHHHH GGVEVCTPTPIEDYELGTVLQNAGRQTIDGHTALQYVRARQVTTEYNGDYGRIKRQQLFL CCCEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH SSLLRSMISHNTFFSLSKLNNVVNTFIDDSYVDNIRTKDLVDLGQSLQDVKAGRITFLTV HHHHHHHHHCCCEEEHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEE PTDGTDSEGNETPRTTDIRKIFDAIINDDPLPGELLPDGTRVPMPGTTTQDTTLAASEHG CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC AASELGETSTAPPTPAATPTEQVDLVTTEPSEINVHVSNSTGQTGLAASAASQLSNYGFG CHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC ITTTDDYPSALPTTTVFFSPGHEQQAATVAASFGGAKLQRITGAQTTVRVVLGSDYASTA EEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCC NLQAPPAAGSTVPLQLSSGAMAPTELPMDLTVVNAGDTSCG CCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCC >Mature Secondary Structure GDGPNATPAQPRAYGSAPWERAIEPVGSHPDIDVAPEPSNTPWTPPPALNHSLPDPTDD CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH EWTRRLETEQSLREPRRAVPEVPASRPARPAPNATAPTAPQPPAPSAHETGSHSLSVADL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH LAREGANGSRRSRRHARTQESDDYAEEPAPASSADDSHTDVLPQVHEAAPQRAQYTDGPA HHHCCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC DEHPPYVDYPDDAPLYDKAAARRVRASNLDDNIDTRAIPVRVGNPDAAVREEEPKRSRRP CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHCCC IYLGRSIAAVVAVCSLTVTGGAWQWSNVKNNRLNHVEALDPNSRDIRDPNAQYGDENFLI EEECHHHHHHHHHHHHEEECCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEE IGVDTRAGANSAMGAGDTSDAEGTRSDTMMLVNIPANRKRVAVVSFPRDLAIQPTLCEVW EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHH NEDTKSYGPDKAYTETKLNSAFAFGGPKCLVKVIQKMSGLNINRFLGVDFAGFSKMVDAL CCHHHCCCCCCHHHHHHCCCEECCCCHHHHHHHHHHHHCCCCHHEECCCHHHHHHHHHHH GGVEVCTPTPIEDYELGTVLQNAGRQTIDGHTALQYVRARQVTTEYNGDYGRIKRQQLFL CCCEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH SSLLRSMISHNTFFSLSKLNNVVNTFIDDSYVDNIRTKDLVDLGQSLQDVKAGRITFLTV HHHHHHHHHCCCEEEHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEE PTDGTDSEGNETPRTTDIRKIFDAIINDDPLPGELLPDGTRVPMPGTTTQDTTLAASEHG CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC AASELGETSTAPPTPAATPTEQVDLVTTEPSEINVHVSNSTGQTGLAASAASQLSNYGFG CHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC ITTTDDYPSALPTTTVFFSPGHEQQAATVAASFGGAKLQRITGAQTTVRVVLGSDYASTA EEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCC NLQAPPAAGSTVPLQLSSGAMAPTELPMDLTVVNAGDTSCG CCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12878519 [H]