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The map label for this gene is ddpA [H]

Identifier: 169627820

GI number: 169627820

Start: 721018

End: 722604

Strand: Direct

Name: ddpA [H]

Synonym: MAB_0719

Alternate gene names: 169627820

Gene position: 721018-722604 (Clockwise)

Preceding gene: 169627818

Following gene: 169627821

Centisome position: 14.23

GC content: 59.86

Gene sequence:

>1587_bases
ATGGTCCGCTTGCGCAAACTCGCCGTGGCCGCATCCGCAATACTCGTCGCTGGATGCGGGATGGGCCGGCCGCCGGGCGC
AATCGACGGCGAATACCTCACGGTCGGCACCACAGATCGCGTTTCCACCCTCGATCCGGCGGGCGCCTATGACAATGGGT
CGTTCCAGGTCGAAAATCAGGTCTACCCGTTCCTGATGAACTTCACGCCGGGGACCGGCGACCTCAAACCCGACCTGGCC
GCTGGATGCGGGTTCGAGAACCCGACGCTGTACCGTTGCACACTCAAGCCTGGCTCGGTGTTCGCCAACGGACACGAGCT
CACCTCATCGGATGTGAAGTTTTCGTACGACCGCGAGCGCGTGATCAACGATCCCAATGGGCCGCAGTCGCTGCTGGCCA
ACCTTGATCGCGTCGAGACGCCCGATGACCTGACCGTCGACTTTCGGCTCAAGCTGCCCAATGATCAGACGTTCCCTCAA
GTGCTGGCCACCAACGCCGGGCCTGTTATCGATGAAGAGGTCTTCCCGCCCGACCGGTTGCTCGACGACGACGCTATCGC
GCGCGCAGAACCGTTCGCGGGGCCGTACACCATCACTTCACACACCAAGAATCAGCTGATAGGCCTGCGCGCCAACCCGA
AATATGTTGGGGGCCTGGGCAAGCCGCAGTGGGATCTGATCGGCATCAAGTACTACACCGGTGGTGAAAATCTCAAGATC
GATATTGAGAACCGGGCCATCGACGTCGCATATCGGAGCTTGTCGCCTAACGATATCGAAACGCTGCGGGTCAACCCGCG
CCTGTCCGTGCATGAGGGCCCCGGCGGGGAGCTCAGGTACATCGTCTTCAACCTCAAGACGATGCCGGGTGTCACGGATG
CGCAGAAGCTGGCCATCCGTAGGGCGGTCGCGTCGTTGGTGGACCGCGAAGCCCTGTCGCGTGACGTGTACAAGGGTGTC
TACACCCCGGTCTATTCGGTGGTGCCTGAATCGATGGCGGGTTCCGTGGAGTCGTTCAAGGCGCTGTACGGCGTCAAGCC
GAATGTTGATCTTGCCCGAAAGTTCTTGTCCGAAGCCCAGGTTGCGGCGCCGGTACTGATAAATCTCCAATACAACCCGG
ACCACTACGGGGGCAACTCATCGGAGGAGTACGCGGCGGTCAAGGGACAACTCGAGGCGTCCGGGCTGTTCTCGGTGGAC
CTACAGTCCACCGAGTGGGTGGCCTACCAGGAACGGCGATCATCGGATTCTTACCCGGTGTATCAGTTTGGCTGGTTTCC
TGATTTTCCCGACCCGGACAACTACCTGACGCCATTCTTCATGCCAGACAACATGTTGGTGAACCACTTTCAGAACGACA
CCATCACCCGGCTCATCACCGCCGAAGTCACCGAACCGGACAGCGCGAAGCGGCTGCGCATCATCGGGCAGATACAGGAC
CTGATGGCACGTGACTACATTTCGACGCTGCCACTGCTCACCGGAAAACAAATCGCGGTGTCGGTGAAGAATGTTGACGG
GATCAAGCTCGGGCCCTCGTTCAAGTTTCAATTCACTCCGCTGAAGAAGACGGGTGGTACTGCATGA

Upstream 100 bases:

>100_bases
AGCATCGCAACCAACCTACCTAACGCTCGCTTGGTTGGCGTTGTGACATCTATTGCAGCGCACCTCAGCGGGTTGGGGCA
AGTGTTGCCATACTCTCCGG

Downstream 100 bases:

>100_bases
GCACCACGCTTCTGCGTTATCTCGGAGTGCGTTTGGCGCTTATCATCCCGACAGCGTGGATCCTGATGACACTGGTCTTC
GTGCTCATGCGGGGGATCGG

Product: putative oligopeptide ABC transporter, solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MVRLRKLAVAASAILVAGCGMGRPPGAIDGEYLTVGTTDRVSTLDPAGAYDNGSFQVENQVYPFLMNFTPGTGDLKPDLA
AGCGFENPTLYRCTLKPGSVFANGHELTSSDVKFSYDRERVINDPNGPQSLLANLDRVETPDDLTVDFRLKLPNDQTFPQ
VLATNAGPVIDEEVFPPDRLLDDDAIARAEPFAGPYTITSHTKNQLIGLRANPKYVGGLGKPQWDLIGIKYYTGGENLKI
DIENRAIDVAYRSLSPNDIETLRVNPRLSVHEGPGGELRYIVFNLKTMPGVTDAQKLAIRRAVASLVDREALSRDVYKGV
YTPVYSVVPESMAGSVESFKALYGVKPNVDLARKFLSEAQVAAPVLINLQYNPDHYGGNSSEEYAAVKGQLEASGLFSVD
LQSTEWVAYQERRSSDSYPVYQFGWFPDFPDPDNYLTPFFMPDNMLVNHFQNDTITRLITAEVTEPDSAKRLRIIGQIQD
LMARDYISTLPLLTGKQIAVSVKNVDGIKLGPSFKFQFTPLKKTGGTA

Sequences:

>Translated_528_residues
MVRLRKLAVAASAILVAGCGMGRPPGAIDGEYLTVGTTDRVSTLDPAGAYDNGSFQVENQVYPFLMNFTPGTGDLKPDLA
AGCGFENPTLYRCTLKPGSVFANGHELTSSDVKFSYDRERVINDPNGPQSLLANLDRVETPDDLTVDFRLKLPNDQTFPQ
VLATNAGPVIDEEVFPPDRLLDDDAIARAEPFAGPYTITSHTKNQLIGLRANPKYVGGLGKPQWDLIGIKYYTGGENLKI
DIENRAIDVAYRSLSPNDIETLRVNPRLSVHEGPGGELRYIVFNLKTMPGVTDAQKLAIRRAVASLVDREALSRDVYKGV
YTPVYSVVPESMAGSVESFKALYGVKPNVDLARKFLSEAQVAAPVLINLQYNPDHYGGNSSEEYAAVKGQLEASGLFSVD
LQSTEWVAYQERRSSDSYPVYQFGWFPDFPDPDNYLTPFFMPDNMLVNHFQNDTITRLITAEVTEPDSAKRLRIIGQIQD
LMARDYISTLPLLTGKQIAVSVKNVDGIKLGPSFKFQFTPLKKTGGTA
>Mature_528_residues
MVRLRKLAVAASAILVAGCGMGRPPGAIDGEYLTVGTTDRVSTLDPAGAYDNGSFQVENQVYPFLMNFTPGTGDLKPDLA
AGCGFENPTLYRCTLKPGSVFANGHELTSSDVKFSYDRERVINDPNGPQSLLANLDRVETPDDLTVDFRLKLPNDQTFPQ
VLATNAGPVIDEEVFPPDRLLDDDAIARAEPFAGPYTITSHTKNQLIGLRANPKYVGGLGKPQWDLIGIKYYTGGENLKI
DIENRAIDVAYRSLSPNDIETLRVNPRLSVHEGPGGELRYIVFNLKTMPGVTDAQKLAIRRAVASLVDREALSRDVYKGV
YTPVYSVVPESMAGSVESFKALYGVKPNVDLARKFLSEAQVAAPVLINLQYNPDHYGGNSSEEYAAVKGQLEASGLFSVD
LQSTEWVAYQERRSSDSYPVYQFGWFPDFPDPDNYLTPFFMPDNMLVNHFQNDTITRLITAEVTEPDSAKRLRIIGQIQD
LMARDYISTLPLLTGKQIAVSVKNVDGIKLGPSFKFQFTPLKKTGGTA

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=517, Percent_Identity=23.0174081237911, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1789966, Length=470, Percent_Identity=23.8297872340426, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787551, Length=556, Percent_Identity=22.4820143884892, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58010; Mature: 58010

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRLRKLAVAASAILVAGCGMGRPPGAIDGEYLTVGTTDRVSTLDPAGAYDNGSFQVENQ
CCCHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCC
VYPFLMNFTPGTGDLKPDLAAGCGFENPTLYRCTLKPGSVFANGHELTSSDVKFSYDRER
EEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEEECCCCEEECCCEECCCCEEEECCHHH
VINDPNGPQSLLANLDRVETPDDLTVDFRLKLPNDQTFPQVLATNAGPVIDEEVFPPDRL
HCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHC
LDDDAIARAEPFAGPYTITSHTKNQLIGLRANPKYVGGLGKPQWDLIGIKYYTGGENLKI
CCCCHHHCCCCCCCCEEEECCCCCCEEEEECCCCEECCCCCCCEEEEEEEEEECCCEEEE
DIENRAIDVAYRSLSPNDIETLRVNPRLSVHEGPGGELRYIVFNLKTMPGVTDAQKLAIR
EECCCEEEEEEECCCCCCCEEEEECCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHH
RAVASLVDREALSRDVYKGVYTPVYSVVPESMAGSVESFKALYGVKPNVDLARKFLSEAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
VAAPVLINLQYNPDHYGGNSSEEYAAVKGQLEASGLFSVDLQSTEWVAYQERRSSDSYPV
CCCEEEEEEEECCCCCCCCCCCCEEEEECCEECCCEEEEECCCCEEEEEHHHCCCCCCCE
YQFGWFPDFPDPDNYLTPFFMPDNMLVNHFQNDTITRLITAEVTEPDSAKRLRIIGQIQD
EEECCCCCCCCCCCCCCCEECCCHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
LMARDYISTLPLLTGKQIAVSVKNVDGIKLGPSFKFQFTPLKKTGGTA
HHHHHHHHHCCCCCCCEEEEEEECCCCEEECCCEEEEEEECCCCCCCC
>Mature Secondary Structure
MVRLRKLAVAASAILVAGCGMGRPPGAIDGEYLTVGTTDRVSTLDPAGAYDNGSFQVENQ
CCCHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCC
VYPFLMNFTPGTGDLKPDLAAGCGFENPTLYRCTLKPGSVFANGHELTSSDVKFSYDRER
EEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEEECCCCEEECCCEECCCCEEEECCHHH
VINDPNGPQSLLANLDRVETPDDLTVDFRLKLPNDQTFPQVLATNAGPVIDEEVFPPDRL
HCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHC
LDDDAIARAEPFAGPYTITSHTKNQLIGLRANPKYVGGLGKPQWDLIGIKYYTGGENLKI
CCCCHHHCCCCCCCCEEEECCCCCCEEEEECCCCEECCCCCCCEEEEEEEEEECCCEEEE
DIENRAIDVAYRSLSPNDIETLRVNPRLSVHEGPGGELRYIVFNLKTMPGVTDAQKLAIR
EECCCEEEEEEECCCCCCCEEEEECCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHH
RAVASLVDREALSRDVYKGVYTPVYSVVPESMAGSVESFKALYGVKPNVDLARKFLSEAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
VAAPVLINLQYNPDHYGGNSSEEYAAVKGQLEASGLFSVDLQSTEWVAYQERRSSDSYPV
CCCEEEEEEEECCCCCCCCCCCCEEEEECCEECCCEEEEECCCCEEEEEHHHCCCCCCCE
YQFGWFPDFPDPDNYLTPFFMPDNMLVNHFQNDTITRLITAEVTEPDSAKRLRIIGQIQD
EEECCCCCCCCCCCCCCCEECCCHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
LMARDYISTLPLLTGKQIAVSVKNVDGIKLGPSFKFQFTPLKKTGGTA
HHHHHHHHHCCCCCCCEEEEEEECCCCEEECCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]