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The map label for this gene is dppB [H]

Identifier: 169627821

GI number: 169627821

Start: 722601

End: 723626

Strand: Direct

Name: dppB [H]

Synonym: MAB_0720

Alternate gene names: 169627821

Gene position: 722601-723626 (Clockwise)

Preceding gene: 169627820

Following gene: 169627822

Centisome position: 14.26

GC content: 62.96

Gene sequence:

>1026_bases
ATGAGCACCACGCTTCTGCGTTATCTCGGAGTGCGTTTGGCGCTTATCATCCCGACAGCGTGGATCCTGATGACACTGGT
CTTCGTGCTCATGCGGGGGATCGGCGATCCCATCACCGCCCAGGCCGGTGGTCGGCTCACGCCGGCAGAGATAGCCAAAC
GCAAGGCCGAGGCAGGATTTGACCGGCCTATCTGGGCCCAGTACTGGGAGTACCTCACCGGGTTGCTCCGTGGTGACCTC
GGGCAGACGCTGACCGACAAGCGGTCGATCGCCGATATCATCGTGGTCAATGGGGCTGCCACGCTGGAGCTCGCGGTGGG
CGCCATCGTGGTGGCGTTGCTGGTGGGAATTCCGTTGGGGCGTATAGCTGCAACGCACCGCGACAGAATCGCCGACGTGT
TCTTGCGGCTGGCGGCGGTATTCTTCTATGCCGCGCCGGTGTTCTTTGTGGCGATTCTGCTCAAGCTGTTCTTCTCGGTG
AAGCTGGGCTGGCTGCCGGCCTCCGGGCGCAGCACGGTGGGTACCGAGATAGCGCTCGACGCCATGCCGCACCGCACCCA
TCTGCTGTTGGTCGACACTGTGTTATACGGCAACGGGGCATATTTCGTGGATGCCCTCAAACATCTCGTGTTGCCGGTGC
TCGCACTGGGGTTGTTGACGGCCGGGGTATTCCTGCGGCTGGTGCGGGTCAATCTGCTGCAAACGCTGCGCGCCGGATAC
GTGGATGCGGCCCGGGCGCGCGGGCTGCCGGAGCGGGTTGTGGTAGGGCGGCACGCATTCCGGAACTCGCTGGTTCCGGT
GGTGACGGTCATGGGGATGCAGATCGCCATGCTGCTCGCCGGCGCCGTACTGACCGAGACGGCTTTCGAATGGAACGGTC
TGGGTTCGCAGCTGGCACACTATCTTTCCGCGCGCGACTTCATAGCGGTGCAAGGCATCGTCACAGTGATCGCGATCATC
GTCGCGGTGATGAGCTTCGTCATCGACTTGGTGGTGGCCTTCATCGACCCGAGGGTGAGGTTCTGA

Upstream 100 bases:

>100_bases
GAAAACAAATCGCGGTGTCGGTGAAGAATGTTGACGGGATCAAGCTCGGGCCCTCGTTCAAGTTTCAATTCACTCCGCTG
AAGAAGACGGGTGGTACTGC

Downstream 100 bases:

>100_bases
TGACAACGTCAGTGAGCAAGCCACACGGAAACCGGCTCCGCAGGCTCCCGGGCGCCGACCTACTGCGCTCCGTGCATGGG
CTGCAGCGCTGGACGCTCGT

Product: oligopeptide ABC transporter, permease protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSTTLLRYLGVRLALIIPTAWILMTLVFVLMRGIGDPITAQAGGRLTPAEIAKRKAEAGFDRPIWAQYWEYLTGLLRGDL
GQTLTDKRSIADIIVVNGAATLELAVGAIVVALLVGIPLGRIAATHRDRIADVFLRLAAVFFYAAPVFFVAILLKLFFSV
KLGWLPASGRSTVGTEIALDAMPHRTHLLLVDTVLYGNGAYFVDALKHLVLPVLALGLLTAGVFLRLVRVNLLQTLRAGY
VDAARARGLPERVVVGRHAFRNSLVPVVTVMGMQIAMLLAGAVLTETAFEWNGLGSQLAHYLSARDFIAVQGIVTVIAII
VAVMSFVIDLVVAFIDPRVRF

Sequences:

>Translated_341_residues
MSTTLLRYLGVRLALIIPTAWILMTLVFVLMRGIGDPITAQAGGRLTPAEIAKRKAEAGFDRPIWAQYWEYLTGLLRGDL
GQTLTDKRSIADIIVVNGAATLELAVGAIVVALLVGIPLGRIAATHRDRIADVFLRLAAVFFYAAPVFFVAILLKLFFSV
KLGWLPASGRSTVGTEIALDAMPHRTHLLLVDTVLYGNGAYFVDALKHLVLPVLALGLLTAGVFLRLVRVNLLQTLRAGY
VDAARARGLPERVVVGRHAFRNSLVPVVTVMGMQIAMLLAGAVLTETAFEWNGLGSQLAHYLSARDFIAVQGIVTVIAII
VAVMSFVIDLVVAFIDPRVRF
>Mature_340_residues
STTLLRYLGVRLALIIPTAWILMTLVFVLMRGIGDPITAQAGGRLTPAEIAKRKAEAGFDRPIWAQYWEYLTGLLRGDLG
QTLTDKRSIADIIVVNGAATLELAVGAIVVALLVGIPLGRIAATHRDRIADVFLRLAAVFFYAAPVFFVAILLKLFFSVK
LGWLPASGRSTVGTEIALDAMPHRTHLLLVDTVLYGNGAYFVDALKHLVLPVLALGLLTAGVFLRLVRVNLLQTLRAGYV
DAARARGLPERVVVGRHAFRNSLVPVVTVMGMQIAMLLAGAVLTETAFEWNGLGSQLAHYLSARDFIAVQGIVTVIAIIV
AVMSFVIDLVVAFIDPRVRF

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=38.6430678466077, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI1787053, Length=338, Percent_Identity=32.2485207100592, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787761, Length=305, Percent_Identity=37.3770491803279, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1789888, Length=340, Percent_Identity=30.8823529411765, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1787550, Length=277, Percent_Identity=31.7689530685921, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787497, Length=340, Percent_Identity=28.5294117647059, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1788504, Length=376, Percent_Identity=26.5957446808511, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36948; Mature: 36816

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTLLRYLGVRLALIIPTAWILMTLVFVLMRGIGDPITAQAGGRLTPAEIAKRKAEAGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
DRPIWAQYWEYLTGLLRGDLGQTLTDKRSIADIIVVNGAATLELAVGAIVVALLVGIPLG
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHCCHH
RIAATHRDRIADVFLRLAAVFFYAAPVFFVAILLKLFFSVKLGWLPASGRSTVGTEIALD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
AMPHRTHLLLVDTVLYGNGAYFVDALKHLVLPVLALGLLTAGVFLRLVRVNLLQTLRAGY
CCCCCHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDAARARGLPERVVVGRHAFRNSLVPVVTVMGMQIAMLLAGAVLTETAFEWNGLGSQLAH
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YLSARDFIAVQGIVTVIAIIVAVMSFVIDLVVAFIDPRVRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STTLLRYLGVRLALIIPTAWILMTLVFVLMRGIGDPITAQAGGRLTPAEIAKRKAEAGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
DRPIWAQYWEYLTGLLRGDLGQTLTDKRSIADIIVVNGAATLELAVGAIVVALLVGIPLG
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHCCHH
RIAATHRDRIADVFLRLAAVFFYAAPVFFVAILLKLFFSVKLGWLPASGRSTVGTEIALD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
AMPHRTHLLLVDTVLYGNGAYFVDALKHLVLPVLALGLLTAGVFLRLVRVNLLQTLRAGY
CCCCCHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDAARARGLPERVVVGRHAFRNSLVPVVTVMGMQIAMLLAGAVLTETAFEWNGLGSQLAH
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YLSARDFIAVQGIVTVIAIIVAVMSFVIDLVVAFIDPRVRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]