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The map label for this gene is lin [H]

Identifier: 169627801

GI number: 169627801

Start: 701411

End: 702208

Strand: Reverse

Name: lin [H]

Synonym: MAB_0699c

Alternate gene names: 169627801

Gene position: 702208-701411 (Counterclockwise)

Preceding gene: 169627802

Following gene: 169627798

Centisome position: 13.86

GC content: 66.29

Gene sequence:

>798_bases
ATGAACAACCTGTACCGCGAACTCGCACCTATCACCGACGAGGCATGGGCCGAGATCGAGAACGAGGCCGCCCGTACCTT
CAAGCGCCACATCGCGGGGCGCCGGGTGGTCGACGTCAGCGAGCCGGGCGGCCCCTCCAGCGCGGCCGTAAGTACCGGCC
ACCTGCTGGATGTGACGGCGCCCGCAGACGGTGTGCAGGCTCATCTGCGGGAGAGCAAGCCGCTTGTGCGGCTGCGCGTT
CCGTTCACCATCAGCAGGTCGGCCATTGACGACGTGGAGCGTGGCGCACAGGATTCCGATTGGGACCCGGTCAAGGAAGC
CGCCAAGAAGCTGGCCTTCGCCGAGGACCGCGCCATCTTCGAGGGATACCCCGCAGCCTCGATCGTCGGCATCCGTGAGT
CCAGTTCCAATCCCGAACTCAAGCTGCCCGAGGATGTCCGCGAGTACCCGGACATCGTCGCGCAGGCGCTCTCGGAGCTG
CGGCTGGCCGGTGTGGACGGCCCGTACTCGGTGCTGCTGTCCGCCGAGGAGTACACGAAGGTCAGCGAGGCTTCCGACCG
CGGGTATCCCATCCGCGAGCACCTTCGCCGGCTGGTCACCGGAGAGATTCTCTGGGCACCGGCGATCGACGGCGCATTCG
TGCTGACCTGCCGCGGGGGCGACTTCGACCTACAGCTGGGTACCGATGTCACCATCGGCTACCTGTCTCACGACGCCGGC
AGCGTACAGCTCTATCTGCAAGAAACCCTGACGTTCCTGAGCTACACCGCCGAGGCATCGGTCGCGCTGCTGCCCTAG

Upstream 100 bases:

>100_bases
ACTTTCTCGACGCTCCTCCGTCGCTGCCCGCCGAGGTGGCCATCAAATCTGTTGAATACCAGGGTTCTCTATCGATCGGC
AGCCTGAAAGGATCGTTGTC

Downstream 100 bases:

>100_bases
TCCCCTTCTCGCCGAATGTCGACTTTGGGGCGGTTCATTCGCAGTTCTTAACAGAAGGTCGACATTCGGTGAGTACTATC
CCGCGGTCAGGACGGCATCC

Product: 29 kDa antigen CFP29 (bacteriocin CFP29)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MNNLYRELAPITDEAWAEIENEAARTFKRHIAGRRVVDVSEPGGPSSAAVSTGHLLDVTAPADGVQAHLRESKPLVRLRV
PFTISRSAIDDVERGAQDSDWDPVKEAAKKLAFAEDRAIFEGYPAASIVGIRESSSNPELKLPEDVREYPDIVAQALSEL
RLAGVDGPYSVLLSAEEYTKVSEASDRGYPIREHLRRLVTGEILWAPAIDGAFVLTCRGGDFDLQLGTDVTIGYLSHDAG
SVQLYLQETLTFLSYTAEASVALLP

Sequences:

>Translated_265_residues
MNNLYRELAPITDEAWAEIENEAARTFKRHIAGRRVVDVSEPGGPSSAAVSTGHLLDVTAPADGVQAHLRESKPLVRLRV
PFTISRSAIDDVERGAQDSDWDPVKEAAKKLAFAEDRAIFEGYPAASIVGIRESSSNPELKLPEDVREYPDIVAQALSEL
RLAGVDGPYSVLLSAEEYTKVSEASDRGYPIREHLRRLVTGEILWAPAIDGAFVLTCRGGDFDLQLGTDVTIGYLSHDAG
SVQLYLQETLTFLSYTAEASVALLP
>Mature_265_residues
MNNLYRELAPITDEAWAEIENEAARTFKRHIAGRRVVDVSEPGGPSSAAVSTGHLLDVTAPADGVQAHLRESKPLVRLRV
PFTISRSAIDDVERGAQDSDWDPVKEAAKKLAFAEDRAIFEGYPAASIVGIRESSSNPELKLPEDVREYPDIVAQALSEL
RLAGVDGPYSVLLSAEEYTKVSEASDRGYPIREHLRRLVTGEILWAPAIDGAFVLTCRGGDFDLQLGTDVTIGYLSHDAG
SVQLYLQETLTFLSYTAEASVALLP

Specific function: Bacteriocin that has antimicrobial activity against a wide range of Gram-positive bacteria, including L.monocytogenes, B.cereus and S.aureus. May have a protease activity [H]

COG id: COG1659

COG function: function code S; Uncharacterized protein, linocin/CFP29 homolog

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007544 [H]

Pfam domain/function: PF04454 Linocin_M18 [H]

EC number: NA

Molecular weight: Translated: 28865; Mature: 28865

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLYRELAPITDEAWAEIENEAARTFKRHIAGRRVVDVSEPGGPSSAAVSTGHLLDVTA
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCEEEEEC
PADGVQAHLRESKPLVRLRVPFTISRSAIDDVERGAQDSDWDPVKEAAKKLAFAEDRAIF
CCCHHHHHHHCCCCEEEEECCEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHH
EGYPAASIVGIRESSSNPELKLPEDVREYPDIVAQALSELRLAGVDGPYSVLLSAEEYTK
CCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEHHHHHH
VSEASDRGYPIREHLRRLVTGEILWAPAIDGAFVLTCRGGDFDLQLGTDVTIGYLSHDAG
HHCCCCCCCCHHHHHHHHHHCCEEEEECCCCEEEEEEECCCEEEEECCCEEEEEEECCCC
SVQLYLQETLTFLSYTAEASVALLP
CEEEHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MNNLYRELAPITDEAWAEIENEAARTFKRHIAGRRVVDVSEPGGPSSAAVSTGHLLDVTA
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCEEEEEC
PADGVQAHLRESKPLVRLRVPFTISRSAIDDVERGAQDSDWDPVKEAAKKLAFAEDRAIF
CCCHHHHHHHCCCCEEEEECCEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHH
EGYPAASIVGIRESSSNPELKLPEDVREYPDIVAQALSELRLAGVDGPYSVLLSAEEYTK
CCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEHHHHHH
VSEASDRGYPIREHLRRLVTGEILWAPAIDGAFVLTCRGGDFDLQLGTDVTIGYLSHDAG
HHCCCCCCCCHHHHHHHHHHCCEEEEECCCCEEEEEEECCCEEEEECCCEEEEEEECCCC
SVQLYLQETLTFLSYTAEASVALLP
CEEEHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8919789 [H]