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The map label for this gene is glxA [H]

Identifier: 169627660

GI number: 169627660

Start: 558162

End: 559118

Strand: Direct

Name: glxA [H]

Synonym: MAB_0557

Alternate gene names: 169627660

Gene position: 558162-559118 (Clockwise)

Preceding gene: 169627659

Following gene: 169627662

Centisome position: 11.02

GC content: 65.62

Gene sequence:

>957_bases
ATGTTGCGTTCGGTTGCCGCGCTGGTGCTCGATCGGGTGGCCGTATTCGAGTTCGGCGTCATCTGCGAGGTGTTCGGTAT
CGACCGCGCTCGAGACGGCGTCCCGAACTTCGACTTCCGGGTGTGCGGCGTGGAACCCGGCGTGCCTTTGCGGACCACCG
TCGGAGCGTCATTGATCCCCGATCACGGACTTGAGGGTCTGGCCGATGCGGATCTGGTTGCGCTTCCGGCACGTCCGTTC
ACCGAGGGCTATCCGCAGGAGGCGCTTGACGCGGTGCGGGCCGCCTCGGAGCGGGGCGCGACCATCCTGACCGTCTGCTC
GGGCGCCTTCATCGCCGGTGCGGCCGGCCTGTTGGACGGTCGGCGCTGCACCACGCATTGGATGTACACCGACACACTGG
CTCGCCAATACCCAACGGCGACAGTGGATCGGGACGTGCTGTTCGTGGACGACGGTGATCTGATCACCAGCGCCGGGACC
GCTGCGGGCATCGATGCCTGTCTGCATTTGGTGCGTCGTGAGCTGGGCAGCGAGATCACCAACAGGATCGCGCGCCGCAT
GGTGGTGCCGCCCCAACGTGCCGGTGGTCAGCGTCAATTCATCCCGCAGCCGGTTCCTGACATGGTGGCCGATGGATTCG
GAGAATTGTGCGACTGGCTGATCGAGAATATCGACCAGTCCCATACGGTGGCGGAACTTGCGGCGCGCGTGCATATGTCG
ACCCGCACATTTGCGCGCAAGTTCACCGATCAGACCGGTGTGACGCCGATGCGCTGGATCATCGACCAGCGGGTGCTGCG
GGCCCGCCGGCTGCTGGAGGAGACGGGCCTGGACATCGATACCGTGGCGGCGCGCAGCGGTTTTGGCACCGCGATCTTGT
TGCGCCATCACTTCCGGCGCGGTGTGGGCATCACGCCCACCGATTACCGCAAGGCCTTTGCGGTAGCCGCGCGCTAG

Upstream 100 bases:

>100_bases
ATGACGAGGGTGGCGGCGATAATGGCCATGGCGCTCATTGTGTTCGGATAAATATCGCGCCAACAGTGGCGGAATTGACG
ACCTTCGATAATATTCAGCC

Downstream 100 bases:

>100_bases
CCGCCCTCGCCGGCCAGCGCGAACCGGCCGTCTGCCGTCTGTTCCACCAGCCCGTCGACCAGAAGCGAATCCAGCGCCCG
GTCACGCTGCGTGATATCGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MLRSVAALVLDRVAVFEFGVICEVFGIDRARDGVPNFDFRVCGVEPGVPLRTTVGASLIPDHGLEGLADADLVALPARPF
TEGYPQEALDAVRAASERGATILTVCSGAFIAGAAGLLDGRRCTTHWMYTDTLARQYPTATVDRDVLFVDDGDLITSAGT
AAGIDACLHLVRRELGSEITNRIARRMVVPPQRAGGQRQFIPQPVPDMVADGFGELCDWLIENIDQSHTVAELAARVHMS
TRTFARKFTDQTGVTPMRWIIDQRVLRARRLLEETGLDIDTVAARSGFGTAILLRHHFRRGVGITPTDYRKAFAVAAR

Sequences:

>Translated_318_residues
MLRSVAALVLDRVAVFEFGVICEVFGIDRARDGVPNFDFRVCGVEPGVPLRTTVGASLIPDHGLEGLADADLVALPARPF
TEGYPQEALDAVRAASERGATILTVCSGAFIAGAAGLLDGRRCTTHWMYTDTLARQYPTATVDRDVLFVDDGDLITSAGT
AAGIDACLHLVRRELGSEITNRIARRMVVPPQRAGGQRQFIPQPVPDMVADGFGELCDWLIENIDQSHTVAELAARVHMS
TRTFARKFTDQTGVTPMRWIIDQRVLRARRLLEETGLDIDTVAARSGFGTAILLRHHFRRGVGITPTDYRKAFAVAAR
>Mature_318_residues
MLRSVAALVLDRVAVFEFGVICEVFGIDRARDGVPNFDFRVCGVEPGVPLRTTVGASLIPDHGLEGLADADLVALPARPF
TEGYPQEALDAVRAASERGATILTVCSGAFIAGAAGLLDGRRCTTHWMYTDTLARQYPTATVDRDVLFVDDGDLITSAGT
AAGIDACLHLVRRELGSEITNRIARRMVVPPQRAGGQRQFIPQPVPDMVADGFGELCDWLIENIDQSHTVAELAARVHMS
TRTFARKFTDQTGVTPMRWIIDQRVLRARRLLEETGLDIDTVAARSGFGTAILLRHHFRRGVGITPTDYRKAFAVAAR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34655; Mature: 34655

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSVAALVLDRVAVFEFGVICEVFGIDRARDGVPNFDFRVCGVEPGVPLRTTVGASLIP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCC
DHGLEGLADADLVALPARPFTEGYPQEALDAVRAASERGATILTVCSGAFIAGAAGLLDG
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
RRCTTHWMYTDTLARQYPTATVDRDVLFVDDGDLITSAGTAAGIDACLHLVRRELGSEIT
CCCEEEEEHHHHHHHHCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHH
NRIARRMVVPPQRAGGQRQFIPQPVPDMVADGFGELCDWLIENIDQSHTVAELAARVHMS
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TRTFARKFTDQTGVTPMRWIIDQRVLRARRLLEETGLDIDTVAARSGFGTAILLRHHFRR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHC
GVGITPTDYRKAFAVAAR
CCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLRSVAALVLDRVAVFEFGVICEVFGIDRARDGVPNFDFRVCGVEPGVPLRTTVGASLIP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCC
DHGLEGLADADLVALPARPFTEGYPQEALDAVRAASERGATILTVCSGAFIAGAAGLLDG
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
RRCTTHWMYTDTLARQYPTATVDRDVLFVDDGDLITSAGTAAGIDACLHLVRRELGSEIT
CCCEEEEEHHHHHHHHCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHH
NRIARRMVVPPQRAGGQRQFIPQPVPDMVADGFGELCDWLIENIDQSHTVAELAARVHMS
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TRTFARKFTDQTGVTPMRWIIDQRVLRARRLLEETGLDIDTVAARSGFGTAILLRHHFRR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHC
GVGITPTDYRKAFAVAAR
CCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]