Click here to switch to the map view.

The map label for this gene is xtmB [H]

Identifier: 169833859

GI number: 169833859

Start: 73964

End: 75274

Strand: Direct

Name: xtmB [H]

Synonym: SPH_0099

Alternate gene names: 169833859

Gene position: 73964-75274 (Clockwise)

Preceding gene: 169833287

Following gene: 169833782

Centisome position: 3.29

GC content: 38.37

Gene sequence:

>1311_bases
ATGACCTTTAATGTCCAGAAGAACATCAACCCTCATTTCAAATCTGTTTGGATTTCTAGCTTACCTTATAATGTTTTGAA
AGGTGGGCGTAACTCTTTTAAATCATCGGTTATTGTACTTAAACTAGCGTATATGATGATAAGGTATATTATCGCTGGAG
AGGCGGCCAATATCGTTGTTATCCGTAAGGTGGCCAATACTATTAGAGACAGTGTTTTCAATAAAGTTTGGTGGGCATTG
AACCTTTTTGGTATAGCTGAGCAGTTCACAAAAACAGTTAGCCCGTTTAAAATCGTACACAAAACGACCGGCTCAACATT
TTACTTTTACGGACAAGATGACTTTCAAAAACTCAAATCAAACGACATTGGAAATATCATAGCGGTTTGGTATGAAGAGG
CTGCTGAATTTAATGACCAAGAGGACTTTGACCAATCAAACGTGACGTTCATGAGGCAGAAACACCCACGCGCCAAGTTT
GTACAATTCTTTTGGAGTTACAATCCACCTAGAAATCCATATAGTTGGATCAATGAATGGTTTGAGAGCATCAAAACGAA
TAAGAACTATTTAGCTCACTCAAGCACCTATCTTGATGATGAACTCGGATTCGTTACTGAGCAGATGCTAGAAGATATAG
AGCGTATCAAAGAGAATGACTACGATTATTACAGATACTTATATCTAGGTGAGGCAGTGGGATTAGGTAACAACGTGTAT
AACATGAGTATGTTTCATGCTATTGATGCTTTGCCTAGCGATGATAAGCTGATTGGCATATCATTTGCGCTAGATGGCGG
ACATCAACAGTCAGCAACCGCTTGTTGCGCTTTTGGAATAACAGCTAAAGGTAAGGTTATATTACTAGATACTTGGTATT
ATTCACCAGCTGGACAAGTGGTAAAGAAAGCGCCTAGTCAGTTATCTAAAGAGATATATGCTTATATGCGATCAGTTATT
GAGAAGTACAGAGTACAAGCCTTGCAATACACAATAGATAGTGCTGAGGGAGCGTTAAGAAACCAGATGTTTCTTGACTT
TGGTTTGAAATGGCATCCGGTCGCTAAACTTAGAAAAGTGACTATGATTGACAGTTTTCAATCTTTGCTTGCTCAAGGTC
GCTTTTACTATCTCAACACCGAAAACAACAAGATATTTATTGAAGAACACAAGATGTATCGTTGGGATGAAAAGACTATC
AAATCTGATAATCCTAGCGTTATCAAAGAAGATGACCATACATGCGACACAACACAGTATTTTGTGTTAGACAATGCAAA
ATTGCTCGGTTTGCGTGTTGGTAACGTTTAG

Upstream 100 bases:

>100_bases
CTCAAATATGAAAATAGAGAGCGTGCTGAAGCTGAGAAAGGCTCAAGTGAAACTATCGAGATAGTGGATGCATGGGCTGA
AGATGTGAGGGGGGCAACGG

Downstream 100 bases:

>100_bases
AGGAGGACGATCATGAGCCTATTTCAAAAAGTAAAAGACTTTTTTAGTCGAGGGAGGTATTACATGCAGACATCAAATCT
TAATAGTATTTTGGAACATC

Product: PBSX family phage terminase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MTFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANTIRDSVFNKVWWAL
NLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIAVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKF
VQFFWSYNPPRNPYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY
NMSMFHAIDALPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSVI
EKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTI
KSDNPSVIKEDDHTCDTTQYFVLDNAKLLGLRVGNV

Sequences:

>Translated_436_residues
MTFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANTIRDSVFNKVWWAL
NLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIAVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKF
VQFFWSYNPPRNPYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY
NMSMFHAIDALPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSVI
EKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTI
KSDNPSVIKEDDHTCDTTQYFVLDNAKLLGLRVGNV
>Mature_435_residues
TFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANTIRDSVFNKVWWALN
LFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIAVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFV
QFFWSYNPPRNPYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYN
MSMFHAIDALPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSVIE
KYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIK
SDNPSVIKEDDHTCDTTQYFVLDNAKLLGLRVGNV

Specific function: Functions as a terminase [H]

COG id: COG1783

COG function: function code R; Phage terminase large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaT and phage SPP1 terminase large subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006701
- InterPro:   IPR006437 [H]

Pfam domain/function: PF04466 Terminase_3 [H]

EC number: NA

Molecular weight: Translated: 50523; Mature: 50392

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVV
CEEEECCCCCCHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
IRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHC
NDIGNIIAVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEW
CCCCCEEEEEEHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHH
FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY
HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCCEE
NMSMFHAIDALPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV
HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHEEECCCCCCCEEEEEECEECCHHHH
VKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY
HHHHHHHHHHHCCCEEEEECCCCEEEEEECCEEECCCHHCCCCCCCEEECCCCCCCCEEE
FVLDNAKLLGLRVGNV
EEEECCEEEEEEECCC
>Mature Secondary Structure 
TFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVV
EEEECCCCCCHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
IRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHC
NDIGNIIAVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEW
CCCCCEEEEEEHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHH
FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY
HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCCEE
NMSMFHAIDALPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV
HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHEEECCCCCCCEEEEEECEECCHHHH
VKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY
HHHHHHHHHHHCCCEEEEECCCCEEEEEECCEEECCCHHCCCCCCCEEECCCCCCCCEEE
FVLDNAKLLGLRVGNV
EEEECCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 8083174 [H]