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The map label for this gene is rfaB [C]

Identifier: 169833354

GI number: 169833354

Start: 215718

End: 216932

Strand: Direct

Name: rfaB [C]

Synonym: SPH_0248

Alternate gene names: 169833354

Gene position: 215718-216932 (Clockwise)

Preceding gene: 169832476

Following gene: 169833540

Centisome position: 9.61

GC content: 29.63

Gene sequence:

>1215_bases
ATGGTTACAATGCAATATAGTTGTGGAAAAATAAATATTAATATCCCTGATGGATATGGAGACATTAAGGATATAGTGTT
TTCGGCTCATATTATAGTTAGGTATAATAATGGACATTGTGGAGGTATAGATCCGCATATAATTGGACTTTGTAAAAAGC
AGATCAGAAGGATGTCTCTATATCCTATTTTGATAATCGTATCTAGAGATTCAAAGGTTATTGATGATTATAAAAATTTA
GATATTGCCTATGTTGATTGTACTCAATGTTCAAATAATTTTGAAACTGCCTTACACGTTAAAAATATTTTAAAATTATT
AAAAATCCAACTTATACACTGTCATGGCTACTCAACTAATTATTTTTTATATATGTTAAAAAAACTTGACAAGAATGGAT
TTGGAAAGGTTAAGACAGTGATAACATGCCATGGATGGGTTGAATATAACTTAAAAAAGAAATTCTTGACTTATTTTGAT
TTTTGGACATATTCTATGGGAGATGCTTTTATTTGTGTATCTGAAACTATGAAAAAAAGATTGGAGAGTATAATAAAAAA
TAAGAAGATAGTTGCAATAAATAACGGAATTAATGTATCAAATAGCGATTTAGATGTAGTAGGTGTTCAAGACTTTAAAA
AAGAATTTTGTATTCCAAATAACAAAAAAATCATTTGTTATGTTGGAAGGTTGGATCCAGAAAAAAGGCCGGATAGATTC
CTTGAATTTGCAGAAAAATTATTTTTAGTCAGAGAAGATGTGATTTTTATTATGGCTGGAAATGGTAGTATGTGGGCTGC
TTTGAAAGAAAAAATTTGCCATTTGAAATGTAGAGATAATTTCAGGTTACTTGGTGAAATCTATCCAGCTACTATAGTTT
ACCAAATATCGGATTTATTGTATATTCCTTCTGATACAGAAGGAATACCTATGTGTGTTTTAGAGTCAATGTCACAAGGA
ACTCCGGTTTTAGCTAGTAATGTTGGCGGGTTAAGTGAAATTATTGAACATAGGGTTGATGGATTTTTATTTGAGAAGGA
AGATGTTGAGGGAGTGTGTGCTTGTGCTAATTTTTTACTCAATGATTCTGAGTATTTGAAATATATAGGTGAGAATAGTA
AATCAAAAATAAGAAAACATTTTTCTGTGCAAAAAATGTTTGTAGAAACCATGAGAGTATATGATGAATTATTAGAGAAG
AGTAGTCATGGATAG

Upstream 100 bases:

>100_bases
AAAATAGGTATCTTTGAGATATAAGCATGATTTACTATAAAATTATTGAGTTATTCATAAAAATTTTTCTATCAAATATC
ATAATGCGTCGTTTAAGGAG

Downstream 100 bases:

>100_bases
GAATATAGATCAAGAATTAGTAAGTATTATAATACCAACACATAATAGGTATGAATCTCTGATTAGAGCTGTGAAAAGTT
GTTTACATCAAAGTTATAAA

Product: glycosyl transferase, group 1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MVTMQYSCGKININIPDGYGDIKDIVFSAHIIVRYNNGHCGGIDPHIIGLCKKQIRRMSLYPILIIVSRDSKVIDDYKNL
DIAYVDCTQCSNNFETALHVKNILKLLKIQLIHCHGYSTNYFLYMLKKLDKNGFGKVKTVITCHGWVEYNLKKKFLTYFD
FWTYSMGDAFICVSETMKKRLESIIKNKKIVAINNGINVSNSDLDVVGVQDFKKEFCIPNNKKIICYVGRLDPEKRPDRF
LEFAEKLFLVREDVIFIMAGNGSMWAALKEKICHLKCRDNFRLLGEIYPATIVYQISDLLYIPSDTEGIPMCVLESMSQG
TPVLASNVGGLSEIIEHRVDGFLFEKEDVEGVCACANFLLNDSEYLKYIGENSKSKIRKHFSVQKMFVETMRVYDELLEK
SSHG

Sequences:

>Translated_404_residues
MVTMQYSCGKININIPDGYGDIKDIVFSAHIIVRYNNGHCGGIDPHIIGLCKKQIRRMSLYPILIIVSRDSKVIDDYKNL
DIAYVDCTQCSNNFETALHVKNILKLLKIQLIHCHGYSTNYFLYMLKKLDKNGFGKVKTVITCHGWVEYNLKKKFLTYFD
FWTYSMGDAFICVSETMKKRLESIIKNKKIVAINNGINVSNSDLDVVGVQDFKKEFCIPNNKKIICYVGRLDPEKRPDRF
LEFAEKLFLVREDVIFIMAGNGSMWAALKEKICHLKCRDNFRLLGEIYPATIVYQISDLLYIPSDTEGIPMCVLESMSQG
TPVLASNVGGLSEIIEHRVDGFLFEKEDVEGVCACANFLLNDSEYLKYIGENSKSKIRKHFSVQKMFVETMRVYDELLEK
SSHG
>Mature_404_residues
MVTMQYSCGKININIPDGYGDIKDIVFSAHIIVRYNNGHCGGIDPHIIGLCKKQIRRMSLYPILIIVSRDSKVIDDYKNL
DIAYVDCTQCSNNFETALHVKNILKLLKIQLIHCHGYSTNYFLYMLKKLDKNGFGKVKTVITCHGWVEYNLKKKFLTYFD
FWTYSMGDAFICVSETMKKRLESIIKNKKIVAINNGINVSNSDLDVVGVQDFKKEFCIPNNKKIICYVGRLDPEKRPDRF
LEFAEKLFLVREDVIFIMAGNGSMWAALKEKICHLKCRDNFRLLGEIYPATIVYQISDLLYIPSDTEGIPMCVLESMSQG
TPVLASNVGGLSEIIEHRVDGFLFEKEDVEGVCACANFLLNDSEYLKYIGENSKSKIRKHFSVQKMFVETMRVYDELLEK
SSHG

Specific function: Adds A Galactose Goup To A Glucose Group Of Lps. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI9755344, Length=339, Percent_Identity=24.4837758112094, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR013534 [H]

Pfam domain/function: PF08323 Glyco_transf_5; PF00534 Glycos_transf_1 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 46264; Mature: 46264

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTMQYSCGKININIPDGYGDIKDIVFSAHIIVRYNNGHCGGIDPHIIGLCKKQIRRMSL
CEEEEECCCEEEEECCCCCCHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
YPILIIVSRDSKVIDDYKNLDIAYVDCTQCSNNFETALHVKNILKLLKIQLIHCHGYSTN
CEEEEEEECCCHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCH
YFLYMLKKLDKNGFGKVKTVITCHGWVEYNLKKKFLTYFDFWTYSMGDAFICVSETMKKR
HHHHHHHHHCCCCCCCEEEEEEEECEEEECHHHHHHHHHHHHEECCCCEEEEHHHHHHHH
LESIIKNKKIVAINNGINVSNSDLDVVGVQDFKKEFCIPNNKKIICYVGRLDPEKRPDRF
HHHHHCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHH
LEFAEKLFLVREDVIFIMAGNGSMWAALKEKICHLKCRDNFRLLGEIYPATIVYQISDLL
HHHHHHHHHEECCEEEEEECCCCCHHHHHHHHHEEEECCCCEEEEHHCCHHEEEEEEEEE
YIPSDTEGIPMCVLESMSQGTPVLASNVGGLSEIIEHRVDGFLFEKEDVEGVCACANFLL
ECCCCCCCCHHHHHHHHCCCCCEEHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
NDSEYLKYIGENSKSKIRKHFSVQKMFVETMRVYDELLEKSSHG
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVTMQYSCGKININIPDGYGDIKDIVFSAHIIVRYNNGHCGGIDPHIIGLCKKQIRRMSL
CEEEEECCCEEEEECCCCCCHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
YPILIIVSRDSKVIDDYKNLDIAYVDCTQCSNNFETALHVKNILKLLKIQLIHCHGYSTN
CEEEEEEECCCHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCH
YFLYMLKKLDKNGFGKVKTVITCHGWVEYNLKKKFLTYFDFWTYSMGDAFICVSETMKKR
HHHHHHHHHCCCCCCCEEEEEEEECEEEECHHHHHHHHHHHHEECCCCEEEEHHHHHHHH
LESIIKNKKIVAINNGINVSNSDLDVVGVQDFKKEFCIPNNKKIICYVGRLDPEKRPDRF
HHHHHCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHH
LEFAEKLFLVREDVIFIMAGNGSMWAALKEKICHLKCRDNFRLLGEIYPATIVYQISDLL
HHHHHHHHHEECCEEEEEECCCCCHHHHHHHHHEEEECCCCEEEEHHCCHHEEEEEEEEE
YIPSDTEGIPMCVLESMSQGTPVLASNVGGLSEIIEHRVDGFLFEKEDVEGVCACANFLL
ECCCCCCCCHHHHHHHHCCCCCEEHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
NDSEYLKYIGENSKSKIRKHFSVQKMFVETMRVYDELLEKSSHG
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]