Click here to switch to the map view.

The map label for this gene is lplC [H]

Identifier: 169832795

GI number: 169832795

Start: 770597

End: 771526

Strand: Direct

Name: lplC [H]

Synonym: SPH_0826

Alternate gene names: 169832795

Gene position: 770597-771526 (Clockwise)

Preceding gene: 169834130

Following gene: 169834073

Centisome position: 34.32

GC content: 31.51

Gene sequence:

>930_bases
ATGATTTTTTCAAAAAATACAAAAAAGAGTAATAGAGACAAAGAAACCTTCGTTGATTATCTCTTTATATTCATTTTAAT
AATAATAACCTTACTTATGTTGTATCCATTATGGTGGGTAGTGATGACGTCACTTTCAGAACCAGTTTGGCTATCTAAAA
ACGTTGTTAAATTATTTCCCTTAAAAATAGATATTACTGCATATAAGTTTATTTTTGGGGATTCTAAACTATGGCAAGCA
TATGGTAATAGTGTATTGTATGCTGCACTATCTACAATTGTTAGTGTTGCGGTATGTAGTATGTATGCCTATCCACTTAC
AATTCCTGAAATTAGGGGTAAAAAATTCTGGAATACTCTTATTTTGATTCCAATGTTCTTTAGTGGAGGAATGATCCCGC
TTTATATACAAGTTGCAAACCTCGGTTTATTGAATACTGCTTGGGCTCTTGTTTTACCTAGTGCTGTTTCTACATATTAT
ATAATTTTGTTTAGAACACAGTTTAAATCAATCCCAATGGAGCTTCGTGAGTCTGCTAGAATTGATGGGGCAAGTGAATT
TAGAATTTTTTGGAATTTAGTATTACCATTATCAAAAGTTATTTTCATGATTATAGCACTTTATTGCATAGTTGGTTCAT
GGAATAGTTTTACTCCTCCATTACTTTATTTGAATGACGACACTAAGATGCCTTTATCTATTTATTTGAGAAATTTAGTT
GTTACAAATACAACTGATACTGCTGAATTATCACTTTCTGCAGGTAATACATATTACCAACAAATTGCTGCTCAAGGTGG
AGGTATTGGTATGCGTATTGCTATTAAGATGGGTACTATTGTTGTTAGTGTTATTCCAATTATGATGATTTATCCATTTA
TTCAGAAACATTTTGTTAAGGGAATCCTGCTAGGTTCTGTGAAAGGTTAA

Upstream 100 bases:

>100_bases
GTAGGATTATTTAATAACATAGTAGCTTTGTTATTTGTTTTATTAGCTAATAAGATTGCTAAAAAACTTGGCGAAGAAGG
AATTGTATAAGGGGGGTAAA

Downstream 100 bases:

>100_bases
TAAGGTAATTATTTTGCAAAATTTAAAAAAATATCTTTTATTAGATAGCGGTTTAGTAGTTGGGTATACATTAGAAAATG
CTCAATTAAAATTAAATAAG

Product: protein LplC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MIFSKNTKKSNRDKETFVDYLFIFILIIITLLMLYPLWWVVMTSLSEPVWLSKNVVKLFPLKIDITAYKFIFGDSKLWQA
YGNSVLYAALSTIVSVAVCSMYAYPLTIPEIRGKKFWNTLILIPMFFSGGMIPLYIQVANLGLLNTAWALVLPSAVSTYY
IILFRTQFKSIPMELRESARIDGASEFRIFWNLVLPLSKVIFMIIALYCIVGSWNSFTPPLLYLNDDTKMPLSIYLRNLV
VTNTTDTAELSLSAGNTYYQQIAAQGGGIGMRIAIKMGTIVVSVIPIMMIYPFIQKHFVKGILLGSVKG

Sequences:

>Translated_309_residues
MIFSKNTKKSNRDKETFVDYLFIFILIIITLLMLYPLWWVVMTSLSEPVWLSKNVVKLFPLKIDITAYKFIFGDSKLWQA
YGNSVLYAALSTIVSVAVCSMYAYPLTIPEIRGKKFWNTLILIPMFFSGGMIPLYIQVANLGLLNTAWALVLPSAVSTYY
IILFRTQFKSIPMELRESARIDGASEFRIFWNLVLPLSKVIFMIIALYCIVGSWNSFTPPLLYLNDDTKMPLSIYLRNLV
VTNTTDTAELSLSAGNTYYQQIAAQGGGIGMRIAIKMGTIVVSVIPIMMIYPFIQKHFVKGILLGSVKG
>Mature_309_residues
MIFSKNTKKSNRDKETFVDYLFIFILIIITLLMLYPLWWVVMTSLSEPVWLSKNVVKLFPLKIDITAYKFIFGDSKLWQA
YGNSVLYAALSTIVSVAVCSMYAYPLTIPEIRGKKFWNTLILIPMFFSGGMIPLYIQVANLGLLNTAWALVLPSAVSTYY
IILFRTQFKSIPMELRESARIDGASEFRIFWNLVLPLSKVIFMIIALYCIVGSWNSFTPPLLYLNDDTKMPLSIYLRNLV
VTNTTDTAELSLSAGNTYYQQIAAQGGGIGMRIAIKMGTIVVSVIPIMMIYPFIQKHFVKGILLGSVKG

Specific function: Part Of The Binding-Protein-Dependent Transport System For Sn-Glycerol-3-Phosphate; Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=234, Percent_Identity=26.0683760683761, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34949; Mature: 34949

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFSKNTKKSNRDKETFVDYLFIFILIIITLLMLYPLWWVVMTSLSEPVWLSKNVVKLFP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEE
LKIDITAYKFIFGDSKLWQAYGNSVLYAALSTIVSVAVCSMYAYPLTIPEIRGKKFWNTL
EEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
ILIPMFFSGGMIPLYIQVANLGLLNTAWALVLPSAVSTYYIILFRTQFKSIPMELRESAR
HHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEECHHHHCCHHHHHHCC
IDGASEFRIFWNLVLPLSKVIFMIIALYCIVGSWNSFTPPLLYLNDDTKMPLSIYLRNLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHE
VTNTTDTAELSLSAGNTYYQQIAAQGGGIGMRIAIKMGTIVVSVIPIMMIYPFIQKHFVK
EECCCCCEEEEEECCCHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
GILLGSVKG
HHHCCCCCC
>Mature Secondary Structure
MIFSKNTKKSNRDKETFVDYLFIFILIIITLLMLYPLWWVVMTSLSEPVWLSKNVVKLFP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEE
LKIDITAYKFIFGDSKLWQAYGNSVLYAALSTIVSVAVCSMYAYPLTIPEIRGKKFWNTL
EEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
ILIPMFFSGGMIPLYIQVANLGLLNTAWALVLPSAVSTYYIILFRTQFKSIPMELRESAR
HHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEECHHHHCCHHHHHHCC
IDGASEFRIFWNLVLPLSKVIFMIIALYCIVGSWNSFTPPLLYLNDDTKMPLSIYLRNLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHE
VTNTTDTAELSLSAGNTYYQQIAAQGGGIGMRIAIKMGTIVVSVIPIMMIYPFIQKHFVK
EECCCCCEEEEEECCCHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
GILLGSVKG
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]