Click here to switch to the map view.

The map label for this gene is yteP [H]

Identifier: 169834130

GI number: 169834130

Start: 769654

End: 770586

Strand: Direct

Name: yteP [H]

Synonym: SPH_0825

Alternate gene names: 169834130

Gene position: 769654-770586 (Clockwise)

Preceding gene: 169832454

Following gene: 169832795

Centisome position: 34.27

GC content: 31.94

Gene sequence:

>933_bases
ATGAATCAAGAAATATTAAAAAAGAGTAAGATTCAATTGACAGTTGAACATATTCAAAAATATTGGATTTTATATTTAAT
GATGATTCCAGCAACTGTTCTACTAATTTTATTTACGTATGGACCAATGTACGGCATTATTATGGCCTTTCAAGACTTTA
CTGTCTTCAAGGGATATACTGGAAGTCCATTTGTCGGTTTAAAACATTTTCAAAGATTGTTCTCAGATCCTTTGTTTTAT
AGATTGTTCAAGAATACGTTCATGGTAGGGGTTTTAGACTTTTTATTCTCTTTCCCAGCTCCGCTTATTTTTGCACTCAT
ATTAAACGAAGTCAGAAAAGTAAGATTTAAGAGTGTAGTTCAATCTATTAGTTATCTTCCTCATTTTATTCCCCTAGTGG
TTATGGTTGGTATTATTTTTGAACTATTTGGTTCATATGGTATTATTAACAGTTTACTTTCATCACTTGGAATGGAGCCA
ATAAGTTTCTTTACAAAATCTGAATGGTTCTTGCCTCTCTACATTGGTTCAGGAGTATGGAAAACAATAGGTTGGGGTTC
TATCATTTATATGGGAGCATTAACCAATATAGATTCAACTTTATATGAAGCAGCAGATATGGACGGGGCTAATAGATGGC
ACAAAATGTGGCATGTAACTCTACCAAGTTTAAGACCTACAGTAGTTACTTTGTTTATACTAAATGCTGGTGGTATCATG
CAAGTAGGATTTGAAAAGGTATTCTTGATGTCTAGTCCTGCAACATATGAAGTATCTGATGTATTATCTACTTATGTTTA
TAGACAAGGTATTTTAAATTCTGATTTCAGTTACTCAGCTGCAGTAGGATTATTTAATAACATAGTAGCTTTGTTATTTG
TTTTATTAGCTAATAAGATTGCTAAAAAACTTGGCGAAGAAGGAATTGTATAA

Upstream 100 bases:

>100_bases
AGCTAGAAAAATGTTAGATTTAGGTGCTTACGCAGTGGTTGTTGGAGGAGCTATCACTCGTCCTTTGGAAATAGCGAAGA
AGTTTATTGAGGTAGTTTAG

Downstream 100 bases:

>100_bases
GGGGGGTAAAATGATTTTTTCAAAAAATACAAAAAAGAGTAATAGAGACAAAGAAACCTTCGTTGATTATCTCTTTATAT
TCATTTTAATAATAATAACC

Product: protein LplB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNQEILKKSKIQLTVEHIQKYWILYLMMIPATVLLILFTYGPMYGIIMAFQDFTVFKGYTGSPFVGLKHFQRLFSDPLFY
RLFKNTFMVGVLDFLFSFPAPLIFALILNEVRKVRFKSVVQSISYLPHFIPLVVMVGIIFELFGSYGIINSLLSSLGMEP
ISFFTKSEWFLPLYIGSGVWKTIGWGSIIYMGALTNIDSTLYEAADMDGANRWHKMWHVTLPSLRPTVVTLFILNAGGIM
QVGFEKVFLMSSPATYEVSDVLSTYVYRQGILNSDFSYSAAVGLFNNIVALLFVLLANKIAKKLGEEGIV

Sequences:

>Translated_310_residues
MNQEILKKSKIQLTVEHIQKYWILYLMMIPATVLLILFTYGPMYGIIMAFQDFTVFKGYTGSPFVGLKHFQRLFSDPLFY
RLFKNTFMVGVLDFLFSFPAPLIFALILNEVRKVRFKSVVQSISYLPHFIPLVVMVGIIFELFGSYGIINSLLSSLGMEP
ISFFTKSEWFLPLYIGSGVWKTIGWGSIIYMGALTNIDSTLYEAADMDGANRWHKMWHVTLPSLRPTVVTLFILNAGGIM
QVGFEKVFLMSSPATYEVSDVLSTYVYRQGILNSDFSYSAAVGLFNNIVALLFVLLANKIAKKLGEEGIV
>Mature_310_residues
MNQEILKKSKIQLTVEHIQKYWILYLMMIPATVLLILFTYGPMYGIIMAFQDFTVFKGYTGSPFVGLKHFQRLFSDPLFY
RLFKNTFMVGVLDFLFSFPAPLIFALILNEVRKVRFKSVVQSISYLPHFIPLVVMVGIIFELFGSYGIINSLLSSLGMEP
ISFFTKSEWFLPLYIGSGVWKTIGWGSIIYMGALTNIDSTLYEAADMDGANRWHKMWHVTLPSLRPTVVTLFILNAGGIM
QVGFEKVFLMSSPATYEVSDVLSTYVYRQGILNSDFSYSAAVGLFNNIVALLFVLLANKIAKKLGEEGIV

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane. May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls [H]

COG id: COG4209

COG function: function code G; ABC-type polysaccharide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=251, Percent_Identity=27.8884462151394, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790465, Length=264, Percent_Identity=27.6515151515151, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35120; Mature: 35120

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCC
>Mature Secondary Structure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HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]