| Definition | Finegoldia magna ATCC 29328 chromosome, complete genome. |
|---|---|
| Accession | NC_010376 |
| Length | 1,797,577 |
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The map label for this gene is dppD [H]
Identifier: 169825258
GI number: 169825258
Start: 1731944
End: 1732903
Strand: Direct
Name: dppD [H]
Synonym: FMG_1561
Alternate gene names: 169825258
Gene position: 1731944-1732903 (Clockwise)
Preceding gene: 169825257
Following gene: 169825259
Centisome position: 96.35
GC content: 33.75
Gene sequence:
>960_bases ATGAAATTAGTAGAAATAAAGAACTTAAATGTAGAATTTCCAGGAAAGGAATACACAACCTACGCTGTAAACAATGTAAG TTTTGATATTTACGAAAATGAAACCCTTGGAATTGTAGGAGAATCGGGTTCAGGTAAATCTGTAACTGCAAAGTCCATAT TAAATTTATTGAAGGACAAATCAAAATATAGCGGCGAAATAATTTATGACAGTGTAAACATGTTAGAGGCTGACGAAAAA ACTCTAAGGCGTATTAGAGGCGATGAAATATCCATGGTTTTTCAAGATCCAATGACCTCTTTAAATCCACTTTTTACAAT TGAAAAGCAAATGTACAAACTTATAAAGAGACATAGAAAAAACTTAAGTGCAAATGAAATAAGAGATATTTCCATAAAAT ATTTAGACCTAGTTGGCATTCCCGACGCTAAAAATAGAATAAAATCATATCCTCATGAGTTTTCAGGCGGAATGAAACAA AGAGTTATGATAGCTATGAGCCTTTGCCTAGAACCAAAACTTATTATTGCAGACGAACCAACTACCGCGCTAGACGTTAC AATTCAAGCACAAGTACTAACACTTTTAAACAATATAAACGAAAAATCTACACAGTCAACTTTACTTATAACCCACGACC TAGGCGTTGTAGCAAATACATGTGATAGAGTTGTGGTGTTATATGGCGGAAAAATTATGGAAGAGGCAACAACAAAAGAA CTATTTACAAAAGGACTTCATCCATATACGAAGGGACTTTTAGCATCTCTTCCAAGAATTGGAGAAAAAGAAAGATTGGT TCCAATACCAGGAAATCCTCCTGTAATAACAGAAAAACCAAAGGGCTGTCCATTTTATGATAGATGTAGTTTAAGACAAG ACATATGTAAAAATAAAGAGTTATCAAAAAAAGAAGTATCCCCTACCCATAGGGTTTACTGTCATATGGTTGAGGTGTAA
Upstream 100 bases:
>100_bases TAGGAACTTCACCATACTTGGCGCTTTTCCCAGGACTTTTAATTCTTTTAACAGTACTTTGCTTTAATGTAATTGGAGAC TATTATAGACAGGAGATACA
Downstream 100 bases:
>100_bases TATGGAAAAGATTTTTGAAATTAAAAACCTAAAAAAGTACTTTCCTGTAAAAAAAGAAAAGGTGTTTGAAGAGCAAAAAT ATTTAAAGGCATTAGACGGA
Product: oligopeptide ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MKLVEIKNLNVEFPGKEYTTYAVNNVSFDIYENETLGIVGESGSGKSVTAKSILNLLKDKSKYSGEIIYDSVNMLEADEK TLRRIRGDEISMVFQDPMTSLNPLFTIEKQMYKLIKRHRKNLSANEIRDISIKYLDLVGIPDAKNRIKSYPHEFSGGMKQ RVMIAMSLCLEPKLIIADEPTTALDVTIQAQVLTLLNNINEKSTQSTLLITHDLGVVANTCDRVVVLYGGKIMEEATTKE LFTKGLHPYTKGLLASLPRIGEKERLVPIPGNPPVITEKPKGCPFYDRCSLRQDICKNKELSKKEVSPTHRVYCHMVEV
Sequences:
>Translated_319_residues MKLVEIKNLNVEFPGKEYTTYAVNNVSFDIYENETLGIVGESGSGKSVTAKSILNLLKDKSKYSGEIIYDSVNMLEADEK TLRRIRGDEISMVFQDPMTSLNPLFTIEKQMYKLIKRHRKNLSANEIRDISIKYLDLVGIPDAKNRIKSYPHEFSGGMKQ RVMIAMSLCLEPKLIIADEPTTALDVTIQAQVLTLLNNINEKSTQSTLLITHDLGVVANTCDRVVVLYGGKIMEEATTKE LFTKGLHPYTKGLLASLPRIGEKERLVPIPGNPPVITEKPKGCPFYDRCSLRQDICKNKELSKKEVSPTHRVYCHMVEV >Mature_319_residues MKLVEIKNLNVEFPGKEYTTYAVNNVSFDIYENETLGIVGESGSGKSVTAKSILNLLKDKSKYSGEIIYDSVNMLEADEK TLRRIRGDEISMVFQDPMTSLNPLFTIEKQMYKLIKRHRKNLSANEIRDISIKYLDLVGIPDAKNRIKSYPHEFSGGMKQ RVMIAMSLCLEPKLIIADEPTTALDVTIQAQVLTLLNNINEKSTQSTLLITHDLGVVANTCDRVVVLYGGKIMEEATTKE LFTKGLHPYTKGLLASLPRIGEKERLVPIPGNPPVITEKPKGCPFYDRCSLRQDICKNKELSKKEVSPTHRVYCHMVEV
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system. Expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9665248, Length=244, Percent_Identity=26.6393442622951, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI148612844, Length=243, Percent_Identity=27.9835390946502, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI255708477, Length=243, Percent_Identity=27.9835390946502, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI9961252, Length=252, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI9961250, Length=252, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI4505771, Length=252, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI42741659, Length=256, Percent_Identity=27.34375, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI6005701, Length=255, Percent_Identity=24.7058823529412, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI171184400, Length=255, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI27477115, Length=283, Percent_Identity=22.6148409893993, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI9955963, Length=261, Percent_Identity=29.1187739463602, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI42490749, Length=234, Percent_Identity=27.3504273504274, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI190343023, Length=228, Percent_Identity=30.2631578947368, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=24.7663551401869, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9955968, Length=251, Percent_Identity=27.0916334661355, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI9955966, Length=251, Percent_Identity=27.0916334661355, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI45243524, Length=251, Percent_Identity=27.0916334661355, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI45446740, Length=282, Percent_Identity=26.5957446808511, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI47078218, Length=282, Percent_Identity=26.5957446808511, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI27436953, Length=237, Percent_Identity=25.7383966244726, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI48994883, Length=297, Percent_Identity=47.4747474747475, Blast_Score=297, Evalue=5e-82, Organism=Escherichia coli, GI1787759, Length=299, Percent_Identity=46.1538461538462, Blast_Score=261, Evalue=5e-71, Organism=Escherichia coli, GI1789963, Length=317, Percent_Identity=40.3785488958991, Blast_Score=255, Evalue=3e-69, Organism=Escherichia coli, GI145693107, Length=270, Percent_Identity=44.4444444444444, Blast_Score=237, Evalue=6e-64, Organism=Escherichia coli, GI1788506, Length=270, Percent_Identity=46.2962962962963, Blast_Score=231, Evalue=6e-62, Organism=Escherichia coli, GI1787548, Length=307, Percent_Identity=36.8078175895765, Blast_Score=211, Evalue=5e-56, Organism=Escherichia coli, GI1787500, Length=335, Percent_Identity=39.1044776119403, Blast_Score=207, Evalue=1e-54, Organism=Escherichia coli, GI1787758, Length=312, Percent_Identity=33.6538461538462, Blast_Score=176, Evalue=3e-45, Organism=Escherichia coli, GI1789962, Length=305, Percent_Identity=33.7704918032787, Blast_Score=174, Evalue=5e-45, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=36.5384615384615, Blast_Score=150, Evalue=7e-38, Organism=Escherichia coli, GI1789890, Length=238, Percent_Identity=37.3949579831933, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=33.976833976834, Blast_Score=141, Evalue=5e-35, Organism=Escherichia coli, GI1789891, Length=234, Percent_Identity=33.7606837606838, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1786398, Length=248, Percent_Identity=32.6612903225806, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789672, Length=259, Percent_Identity=31.2741312741313, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI1788225, Length=260, Percent_Identity=28.4615384615385, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789032, Length=233, Percent_Identity=29.6137339055794, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=31.404958677686, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=31.7796610169492, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1787105, Length=251, Percent_Identity=30.6772908366534, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081791, Length=249, Percent_Identity=27.710843373494, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788761, Length=270, Percent_Identity=28.8888888888889, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081834, Length=235, Percent_Identity=31.063829787234, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788644, Length=210, Percent_Identity=32.3809523809524, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=30.5555555555556, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790162, Length=244, Percent_Identity=25.4098360655738, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786872, Length=224, Percent_Identity=31.6964285714286, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787712, Length=241, Percent_Identity=25.7261410788382, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1786319, Length=246, Percent_Identity=27.2357723577236, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786345, Length=248, Percent_Identity=25.4032258064516, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788450, Length=233, Percent_Identity=27.0386266094421, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87082267, Length=246, Percent_Identity=26.4227642276423, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87081709, Length=246, Percent_Identity=26.0162601626016, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1787370, Length=256, Percent_Identity=25.78125, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1790467, Length=262, Percent_Identity=25.9541984732824, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1789873, Length=214, Percent_Identity=28.5046728971963, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=257, Percent_Identity=25.2918287937743, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=27.5862068965517, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=28.310502283105, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=25.2380952380952, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786803, Length=237, Percent_Identity=25.7383966244726, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1789991, Length=235, Percent_Identity=24.2553191489362, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787143, Length=247, Percent_Identity=26.7206477732794, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790544, Length=242, Percent_Identity=25.6198347107438, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789864, Length=249, Percent_Identity=24.0963855421687, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789586, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786698, Length=215, Percent_Identity=26.5116279069767, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI193209708, Length=244, Percent_Identity=31.9672131147541, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI193202349, Length=255, Percent_Identity=26.2745098039216, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193211015, Length=254, Percent_Identity=29.1338582677165, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71996809, Length=254, Percent_Identity=29.1338582677165, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193211017, Length=254, Percent_Identity=29.1338582677165, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI115534520, Length=243, Percent_Identity=27.9835390946502, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193208177, Length=231, Percent_Identity=29.004329004329, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI212646699, Length=245, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17558664, Length=240, Percent_Identity=30.8333333333333, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI25146777, Length=224, Percent_Identity=31.25, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17569143, Length=265, Percent_Identity=29.811320754717, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71992285, Length=247, Percent_Identity=28.3400809716599, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115535101, Length=244, Percent_Identity=27.0491803278689, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17541710, Length=223, Percent_Identity=28.2511210762332, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17569145, Length=247, Percent_Identity=27.5303643724696, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71992290, Length=236, Percent_Identity=27.1186440677966, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17567269, Length=255, Percent_Identity=24.7058823529412, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17558094, Length=244, Percent_Identity=29.0983606557377, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=257, Percent_Identity=31.5175097276265, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324985, Length=253, Percent_Identity=26.4822134387352, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6323959, Length=233, Percent_Identity=29.6137339055794, Blast_Score=70, Evalue=6e-13, Organism=Drosophila melanogaster, GI85726357, Length=242, Percent_Identity=26.0330578512397, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24659289, Length=243, Percent_Identity=27.1604938271605, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357907, Length=221, Percent_Identity=28.5067873303167, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24641565, Length=261, Percent_Identity=28.3524904214559, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI17136662, Length=241, Percent_Identity=26.5560165975104, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI281363262, Length=242, Percent_Identity=29.3388429752066, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24653245, Length=240, Percent_Identity=29.5833333333333, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666092, Length=229, Percent_Identity=26.6375545851528, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35925; Mature: 35925
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLVEIKNLNVEFPGKEYTTYAVNNVSFDIYENETLGIVGESGSGKSVTAKSILNLLKDK CCEEEEECCCEECCCCCEEEEEEECEEEEEECCCEEEEEECCCCCCCEEHHHHHHHHHCC SKYSGEIIYDSVNMLEADEKTLRRIRGDEISMVFQDPMTSLNPLFTIEKQMYKLIKRHRK HHCCCEEEEECCCHHCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC NLSANEIRDISIKYLDLVGIPDAKNRIKSYPHEFSGGMKQRVMIAMSLCLEPKLIIADEP CCCHHHHHCCEEEEEEEECCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQVLTLLNNINEKSTQSTLLITHDLGVVANTCDRVVVLYGGKIMEEATTKE CCEEEEEHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHCCCEEEEEECCCHHHHHHHHH LFTKGLHPYTKGLLASLPRIGEKERLVPIPGNPPVITEKPKGCPFYDRCSLRQDICKNKE HHHHCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC LSKKEVSPTHRVYCHMVEV CCHHHCCCCCEEEEEEECC >Mature Secondary Structure MKLVEIKNLNVEFPGKEYTTYAVNNVSFDIYENETLGIVGESGSGKSVTAKSILNLLKDK CCEEEEECCCEECCCCCEEEEEEECEEEEEECCCEEEEEECCCCCCCEEHHHHHHHHHCC SKYSGEIIYDSVNMLEADEKTLRRIRGDEISMVFQDPMTSLNPLFTIEKQMYKLIKRHRK HHCCCEEEEECCCHHCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC NLSANEIRDISIKYLDLVGIPDAKNRIKSYPHEFSGGMKQRVMIAMSLCLEPKLIIADEP CCCHHHHHCCEEEEEEEECCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQVLTLLNNINEKSTQSTLLITHDLGVVANTCDRVVVLYGGKIMEEATTKE CCEEEEEHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHCCCEEEEEECCCHHHHHHHHH LFTKGLHPYTKGLLASLPRIGEKERLVPIPGNPPVITEKPKGCPFYDRCSLRQDICKNKE HHHHCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEECCCCCCCCCHHHHHHHHHHHCCCC LSKKEVSPTHRVYCHMVEV CCHHHCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1766370; 9384377 [H]