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The map label for this gene is ydeL [H]

Identifier: 169825158

GI number: 169825158

Start: 1614243

End: 1615622

Strand: Direct

Name: ydeL [H]

Synonym: FMG_1461

Alternate gene names: 169825158

Gene position: 1614243-1615622 (Clockwise)

Preceding gene: 169825154

Following gene: 169825159

Centisome position: 89.8

GC content: 33.84

Gene sequence:

>1380_bases
ATGTTCATAAATTTAAACGACAAAGATTATTTGTATAATCAAATTTACGATTCTATAAAAGAAAAGATTAACATGAAACA
ATTGAAAACCAATGACAAGCTTCCTTCTATTAGAAAATTATCTAATGAGCTGAATATTTCAATAAACACTGTGTCCAATG
CGTATTATCAATTGGAAAAGGAAGGCTACATTCGTTCCAGTGAGAGAAGTGGATTTTTTGTAGAAAAATCTGGTCACATT
TTGCGAAACGATGCAAACTTTGATGATGAGGATATGATTGTAGAAGAGAAGAATACTTTCAAGTATGATTTTTCATTTTC
TGGTGTGGATAAATCGTGTTTCAAATACAAGCAGATCAGAAAAGCTTTCAGGGATTCAATTAACGAAGATGATGATGCTA
TTTTGGGAAAGGTCGATGGACTTGGACTATTTTCTTTGAGGTGTTCTATTTCAAATTATCTGAAGGATTTCAGGGAAATT
ATCGTGAATCCCAACCAAATCGTCGTGAGTTCCGGCAGCAACGAGTTGTTGATTTTGATTAAAAATCTTCTTAACAATCC
CATTTTTGGTTTCGAAAATCCTGGATATGCATATCACGGAATTGGTTTCTACAATAATTTCGACAGCACGCCGATTAATG
TGAATGAGGATGGGATTGATATAGATTTTCTCAAACAAACAGATGCGAATGTTGTAAGCGTGACTCCTTCTCATCAGTTT
CCTACTTCTGCGATTATGCCTATTAATAAAAGGATTGATTTGTTGAATTGGGCTTACGAAAAAAATAATCGCTACATAAT
TGAGGATGACTACGATGCAGAATTCAAATACAAGCTTCGTCCTATCGCCCCATTAAAAACTTTGGATGTGAATGATAAGG
TGATTTACATTGGGAATTTTTCACGTACGGTAACTCCTGCGATGCGTGTGAGTTTTATGGTTTTGCCTAAAAATTTGATG
AATAAATTTTATTCTGTATTAAAATCTGAGAGATGTCCTGTGTCGATTTTCGTTCAATCTGCGTTGTCCAAGTTTATCGA
CAGCGGAGATTTTGAAAAGCAGGTCAATCAAATGAAAAAGGTGTACGCAAAAAAATACGAAATTATTTTTTCAAAAATTA
ACGGCTGCAAATACATTGATTTTGAAAAAACCGATTGTGGCACATCTGTCGTAATCAAGGTCGATAAGAGAATTGACAGG
GATGTTTTGTTGAAAACTTTGAAAGAAAATTCCGTTTATGTAATTGCCATCGATGATTTTTATTTGGATAAAAACGTGGA
CACTAATGTGTTTTTGATTGGGTTTGCGAAGATGAGCTACGATGATATCTCCAATGGTATGGATATTATCGTAAATGTTG
TAAATAATCTTGTCAATTAG

Upstream 100 bases:

>100_bases
CTCGCCTTTATAATACATGCAAATTGCATCTAATTATAGTAGCAAAACAAAATAATTTTATGGGTACAGATGTGTTATAC
TTAATCCAACGGAGGATTTT

Downstream 100 bases:

>100_bases
ATTACAAAATATTGTAAAAGAGTTATAATAAAGGAAGAATATAAATAGGAGGTTACTCATGCAAAGATATGAAGATTTAG
AACCAAAGAATGTGTTTCAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MFINLNDKDYLYNQIYDSIKEKINMKQLKTNDKLPSIRKLSNELNISINTVSNAYYQLEKEGYIRSSERSGFFVEKSGHI
LRNDANFDDEDMIVEEKNTFKYDFSFSGVDKSCFKYKQIRKAFRDSINEDDDAILGKVDGLGLFSLRCSISNYLKDFREI
IVNPNQIVVSSGSNELLILIKNLLNNPIFGFENPGYAYHGIGFYNNFDSTPINVNEDGIDIDFLKQTDANVVSVTPSHQF
PTSAIMPINKRIDLLNWAYEKNNRYIIEDDYDAEFKYKLRPIAPLKTLDVNDKVIYIGNFSRTVTPAMRVSFMVLPKNLM
NKFYSVLKSERCPVSIFVQSALSKFIDSGDFEKQVNQMKKVYAKKYEIIFSKINGCKYIDFEKTDCGTSVVIKVDKRIDR
DVLLKTLKENSVYVIAIDDFYLDKNVDTNVFLIGFAKMSYDDISNGMDIIVNVVNNLVN

Sequences:

>Translated_459_residues
MFINLNDKDYLYNQIYDSIKEKINMKQLKTNDKLPSIRKLSNELNISINTVSNAYYQLEKEGYIRSSERSGFFVEKSGHI
LRNDANFDDEDMIVEEKNTFKYDFSFSGVDKSCFKYKQIRKAFRDSINEDDDAILGKVDGLGLFSLRCSISNYLKDFREI
IVNPNQIVVSSGSNELLILIKNLLNNPIFGFENPGYAYHGIGFYNNFDSTPINVNEDGIDIDFLKQTDANVVSVTPSHQF
PTSAIMPINKRIDLLNWAYEKNNRYIIEDDYDAEFKYKLRPIAPLKTLDVNDKVIYIGNFSRTVTPAMRVSFMVLPKNLM
NKFYSVLKSERCPVSIFVQSALSKFIDSGDFEKQVNQMKKVYAKKYEIIFSKINGCKYIDFEKTDCGTSVVIKVDKRIDR
DVLLKTLKENSVYVIAIDDFYLDKNVDTNVFLIGFAKMSYDDISNGMDIIVNVVNNLVN
>Mature_459_residues
MFINLNDKDYLYNQIYDSIKEKINMKQLKTNDKLPSIRKLSNELNISINTVSNAYYQLEKEGYIRSSERSGFFVEKSGHI
LRNDANFDDEDMIVEEKNTFKYDFSFSGVDKSCFKYKQIRKAFRDSINEDDDAILGKVDGLGLFSLRCSISNYLKDFREI
IVNPNQIVVSSGSNELLILIKNLLNNPIFGFENPGYAYHGIGFYNNFDSTPINVNEDGIDIDFLKQTDANVVSVTPSHQF
PTSAIMPINKRIDLLNWAYEKNNRYIIEDDYDAEFKYKLRPIAPLKTLDVNDKVIYIGNFSRTVTPAMRVSFMVLPKNLM
NKFYSVLKSERCPVSIFVQSALSKFIDSGDFEKQVNQMKKVYAKKYEIIFSKINGCKYIDFEKTDCGTSVVIKVDKRIDR
DVLLKTLKENSVYVIAIDDFYLDKNVDTNVFLIGFAKMSYDDISNGMDIIVNVVNNLVN

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=437, Percent_Identity=21.9679633867277, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787710, Length=397, Percent_Identity=21.9143576826196, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52886; Mature: 52886

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFINLNDKDYLYNQIYDSIKEKINMKQLKTNDKLPSIRKLSNELNISINTVSNAYYQLEK
CEEECCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHCCCCEEEEEEECCEEEEEEC
EGYIRSSERSGFFVEKSGHILRNDANFDDEDMIVEEKNTFKYDFSFSGVDKSCFKYKQIR
CCCEECCCCCCEEEECCCCEEECCCCCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHH
KAFRDSINEDDDAILGKVDGLGLFSLRCSISNYLKDFREIIVNPNQIVVSSGSNELLILI
HHHHHCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE
KNLLNNPIFGFENPGYAYHGIGFYNNFDSTPINVNEDGIDIDFLKQTDANVVSVTPSHQF
HHHHCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCC
PTSAIMPINKRIDLLNWAYEKNNRYIIEDDYDAEFKYKLRPIAPLKTLDVNDKVIYIGNF
CCCCCCCCCCCEEHEEEEEECCCEEEEECCCCCCEEEEEECCCCEEEECCCCCEEEEECC
SRTVTPAMRVSFMVLPKNLMNKFYSVLKSERCPVSIFVQSALSKFIDSGDFEKQVNQMKK
CCCCCHHHHEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
VYAKKYEIIFSKINGCKYIDFEKTDCGTSVVIKVDKRIDRDVLLKTLKENSVYVIAIDDF
HHHHHHHHHEECCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
YLDKNVDTNVFLIGFAKMSYDDISNGMDIIVNVVNNLVN
EECCCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFINLNDKDYLYNQIYDSIKEKINMKQLKTNDKLPSIRKLSNELNISINTVSNAYYQLEK
CEEECCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHCCCCEEEEEEECCEEEEEEC
EGYIRSSERSGFFVEKSGHILRNDANFDDEDMIVEEKNTFKYDFSFSGVDKSCFKYKQIR
CCCEECCCCCCEEEECCCCEEECCCCCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHH
KAFRDSINEDDDAILGKVDGLGLFSLRCSISNYLKDFREIIVNPNQIVVSSGSNELLILI
HHHHHCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE
KNLLNNPIFGFENPGYAYHGIGFYNNFDSTPINVNEDGIDIDFLKQTDANVVSVTPSHQF
HHHHCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCC
PTSAIMPINKRIDLLNWAYEKNNRYIIEDDYDAEFKYKLRPIAPLKTLDVNDKVIYIGNF
CCCCCCCCCCCEEHEEEEEECCCEEEEECCCCCCEEEEEECCCCEEEECCCCCEEEEECC
SRTVTPAMRVSFMVLPKNLMNKFYSVLKSERCPVSIFVQSALSKFIDSGDFEKQVNQMKK
CCCCCHHHHEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
VYAKKYEIIFSKINGCKYIDFEKTDCGTSVVIKVDKRIDRDVLLKTLKENSVYVIAIDDF
HHHHHHHHHEECCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEE
YLDKNVDTNVFLIGFAKMSYDDISNGMDIIVNVVNNLVN
EECCCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]