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The map label for this gene is xylR [C]

Identifier: 169824908

GI number: 169824908

Start: 1320559

End: 1321221

Strand: Direct

Name: xylR [C]

Synonym: FMG_1211

Alternate gene names: 169824908

Gene position: 1320559-1321221 (Clockwise)

Preceding gene: 169824883

Following gene: 169824913

Centisome position: 73.46

GC content: 28.21

Gene sequence:

>663_bases
ATGTTCGTATTGGAATCAAAATTGATAAAGGCAGTTCAGATAAAATCAAATGAAGAATCTCACGAATTAGCCGATAAAAT
ATTAAAAAACTGGGAAGAAACTGAAACTAATATTAGATCCCAAAAGAACACAATTATTCAATTGCTAGGGATATTTTGTT
GGAATCAGGTTAAAAATATAAGTGATCCTGAAAGTCTAAAATATAATGAAATCGAAAAAAACAAATTATTAAATAAATTA
GATCGCGATGATTCAGAAAATTTAAATGAAATATTTCATGAAATCGTTGAGTATTATACAACAAATCAAAATATATTTAC
TAAAGGCTGTGAAAATCCTTTAATCAAAAGAACTTTGGATTATATTTACAACAATAGCGAACAAAAAATTTCACTGGAAG
TGTTATCTGATCATTTGCATATATCTAAAAGTTATTTGTCGACATTGATTTGCCAAAACACCGGCACTACACTTCCAAAT
ATTTTGGCAACTTTCAGAATTGAAAAAAGCCTCCTGCTTTTGACTTACACTGACAAATCAATCAGCGAAATATCAAAAGA
ATTGGGCTTCCAATCAGATTCTTATTTTTGCCAACAATTTAAAAATATAAAACAAATCACACCTAAAAAGTTCAGAACAA
TAACAAAGCGTGACCTTTATTAA

Upstream 100 bases:

>100_bases
AAATCAAAACAAATTGCAAAAATATATCAATTGTTGCAAATTTCTGCAATTTAGTTATATAATTAGTTAGTACTATCAAA
AATGATGAAAGGAATTGTAT

Downstream 100 bases:

>100_bases
GGCCACGCTTTTTTTTATTGTTTATCGTAATCTTTAGAATGTGGACAAGAACTGGATCCACAATCACAGCTGCCACCTTT
TTTTATAATATGACGTACTG

Product: AraC domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MFVLESKLIKAVQIKSNEESHELADKILKNWEETETNIRSQKNTIIQLLGIFCWNQVKNISDPESLKYNEIEKNKLLNKL
DRDDSENLNEIFHEIVEYYTTNQNIFTKGCENPLIKRTLDYIYNNSEQKISLEVLSDHLHISKSYLSTLICQNTGTTLPN
ILATFRIEKSLLLLTYTDKSISEISKELGFQSDSYFCQQFKNIKQITPKKFRTITKRDLY

Sequences:

>Translated_220_residues
MFVLESKLIKAVQIKSNEESHELADKILKNWEETETNIRSQKNTIIQLLGIFCWNQVKNISDPESLKYNEIEKNKLLNKL
DRDDSENLNEIFHEIVEYYTTNQNIFTKGCENPLIKRTLDYIYNNSEQKISLEVLSDHLHISKSYLSTLICQNTGTTLPN
ILATFRIEKSLLLLTYTDKSISEISKELGFQSDSYFCQQFKNIKQITPKKFRTITKRDLY
>Mature_220_residues
MFVLESKLIKAVQIKSNEESHELADKILKNWEETETNIRSQKNTIIQLLGIFCWNQVKNISDPESLKYNEIEKNKLLNKL
DRDDSENLNEIFHEIVEYYTTNQNIFTKGCENPLIKRTLDYIYNNSEQKISLEVLSDHLHISKSYLSTLICQNTGTTLPN
ILATFRIEKSLLLLTYTDKSISEISKELGFQSDSYFCQQFKNIKQITPKKFRTITKRDLY

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 25829; Mature: 25829

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVLESKLIKAVQIKSNEESHELADKILKNWEETETNIRSQKNTIIQLLGIFCWNQVKNI
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SDPESLKYNEIEKNKLLNKLDRDDSENLNEIFHEIVEYYTTNQNIFTKGCENPLIKRTLD
CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHH
YIYNNSEQKISLEVLSDHLHISKSYLSTLICQNTGTTLPNILATFRIEKSLLLLTYTDKS
HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEEEEECCHH
ISEISKELGFQSDSYFCQQFKNIKQITPKKFRTITKRDLY
HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MFVLESKLIKAVQIKSNEESHELADKILKNWEETETNIRSQKNTIIQLLGIFCWNQVKNI
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SDPESLKYNEIEKNKLLNKLDRDDSENLNEIFHEIVEYYTTNQNIFTKGCENPLIKRTLD
CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHH
YIYNNSEQKISLEVLSDHLHISKSYLSTLICQNTGTTLPNILATFRIEKSLLLLTYTDKS
HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEEEEECCHH
ISEISKELGFQSDSYFCQQFKNIKQITPKKFRTITKRDLY
HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]