Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 169824355

GI number: 169824355

Start: 721840

End: 722037

Strand: Direct

Name: rpoZ

Synonym: FMG_0658

Alternate gene names: 169824355

Gene position: 721840-722037 (Clockwise)

Preceding gene: 169824354

Following gene: 169824356

Centisome position: 40.16

GC content: 28.28

Gene sequence:

>198_bases
ATGATTAATCCATCATTTAAAAAATTATCAGAAATAAATAATAGTAGATATGCACTTTGTGTAATGGTAAGTAAAAGAGC
AAGAATGCTAATAGACGGAAAAGAAACTAAATTAAAAAAAGCAAAAGCCCAACCAGTTACTACAGCTTTGGAAGAAGTTA
TGGAAAAGAAGGTTTGGGAAGATAAATCAAATGAATAA

Upstream 100 bases:

>100_bases
TATGATTATGCAGTTATTAATGAAGATGTTGATGAAACTGTAAAAAATATTGAAACTATAATTGATGCAGAAAAATTTAG
AGTTGTAAAAGGAGAAAAAT

Downstream 100 bases:

>100_bases
AAACATTCTTTTAGGAGTTACTGGAGGAATTGCTATTTACAAAGTTGTGGATGTTGTAAGTAGATTAAAAAAACTTGACT
ATAATATTAAAATCATTATG

Product: putative DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MINPSFKKLSEINNSRYALCVMVSKRARMLIDGKETKLKKAKAQPVTTALEEVMEKKVWEDKSNE

Sequences:

>Translated_65_residues
MINPSFKKLSEINNSRYALCVMVSKRARMLIDGKETKLKKAKAQPVTTALEEVMEKKVWEDKSNE
>Mature_65_residues
MINPSFKKLSEINNSRYALCVMVSKRARMLIDGKETKLKKAKAQPVTTALEEVMEKKVWEDKSNE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_FINM2 (B0S136)

Other databases:

- EMBL:   AP008971
- RefSeq:   YP_001691966.1
- GeneID:   6019657
- GenomeReviews:   AP008971_GR
- KEGG:   fma:FMG_0658
- HOGENOM:   HBG742204
- OMA:   IVNGSAP
- ProtClustDB:   PRK00392
- BioCyc:   FMAG334413:FMG_0658-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7486; Mature: 7486

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINPSFKKLSEINNSRYALCVMVSKRARMLIDGKETKLKKAKAQPVTTALEEVMEKKVWE
CCCCHHHHHHHCCCCCEEEEEEECCCCHHEECCCHHHHHHHCCCHHHHHHHHHHHHHHCC
DKSNE
CCCCC
>Mature Secondary Structure
MINPSFKKLSEINNSRYALCVMVSKRARMLIDGKETKLKKAKAQPVTTALEEVMEKKVWE
CCCCHHHHHHHCCCCCEEEEEEECCCCHHEECCCHHHHHHHCCCHHHHHHHHHHHHHHCC
DKSNE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA