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The map label for this gene is ydcM [C]

Identifier: 169823518

GI number: 169823518

Start: 7087

End: 8223

Strand: Reverse

Name: ydcM [C]

Synonym: FMG_P0004

Alternate gene names: 169823518

Gene position: 8223-7087 (Counterclockwise)

Preceding gene: 169823519

Following gene: 169823516

Centisome position: 4.35

GC content: 31.22

Gene sequence:

>1137_bases
ATGAGAAAGAAAAAAGGAGTAAAAAACAAAGCAATAAAATACAGATTATATCCAACGACTGAACAAGAAATATACTTTTC
TAAATGCTTTGGATGTTGTAGAAAAATCTGGAACTTGATGCTTTGTGATAGAGAAAAATCATATAAAGAAACTGGAAAAT
CTGTTAAAAATACACCTGCTTTATATAAATCTGAACACCCTTATCTTAAAGAGGTTGATTCGTTAGCCCTTGCTAATGTA
TATCTTGATTTAGAACTCGCATATAAGAGATTTTTCGATAAAAAGGGTGGTTATCCTAAGTTTAAGTCTCTAAAGAAATC
AAGAAAATCATATACTACTAATAATCAAAATGGAACTATAGCTATTACGGATAACGCAATAAAACTACCGAAAGCAGGCT
TTGTTAAAGCTAAGATTCATAGACAACCTAAATCTGATTGGAAACTAAAATCAGCAACAATTTTTCAAACTACAGATAGT
CTTTATTTTGTATCGGTTATCTTCGAGTATGAAGAAAATATAGACAAGACTACTAACTTTGATAATTGTATAGGACTAGA
TTATAAGTCAGATGGTTTGTATATGGATAGCTTTGGTAATGTAGGAGATAATCATAAGTTTTATCGTGAAAGCCACAAGA
AACTTGCGAAAGAACAAAGACGTTTATCTCGTAAAATAGGCTCTAAGAAAAACGAAAAGAAATCAAATAACTACTTAAAA
CAACTTAAAAAGGTCAATAAGATTCATAGACATATCGCAAATCAAAGACTAGATAATTTGCACAAAAAGTCTAACGAGAT
AGCCAATCGTTATGATGTCGTATGTGTAGAAAATCTTAATATGAGAAATATGTCTAATAAAGGATTTAGAAATGGAAAAG
CCACTATGGATAACGGATATGGTATGTTTTTGAATCTCTTAGCATACAAGCTCAACGACAGGGGCAAATACCTTATCAAA
GTCGATAAGTGGTATCCGTCAAGTCAGATATGTAGCCTTTGTGGTTCTAAAAAGAAACTAGCATTAAACGAAAGAACTTA
TATTTGTGAGTGCGGAAATATCATTGATAGAGACTTGAACGCAGCAATAAACATAAAAAGAGAAGGTCTAAGACTACTAA
AAGAAATGGTAGCCTAA

Upstream 100 bases:

>100_bases
TATGATGAAATGTTTTGGTCTCAAAGCTTCTGCCTATTGTCAACCGGAGGGGCAACTGTTGATATAATAAAAAATTACAT
TCAAGAGCAAGGAGAAAAGG

Downstream 100 bases:

>100_bases
AGTAATATATCGTAGGCTAGGAACTAGCCGAAGTTACGCTTGTGGACTTTGTGTAAGACGATTAATCTGTTTTGATTTAT
CAATCAGATTCATCGCAGTA

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPALYKSEHPYLKEVDSLALANV
YLDLELAYKRFFDKKGGYPKFKSLKKSRKSYTTNNQNGTIAITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDS
LYFVSVIFEYEENIDKTTNFDNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNEKKSNNYLK
QLKKVNKIHRHIANQRLDNLHKKSNEIANRYDVVCVENLNMRNMSNKGFRNGKATMDNGYGMFLNLLAYKLNDRGKYLIK
VDKWYPSSQICSLCGSKKKLALNERTYICECGNIIDRDLNAAINIKREGLRLLKEMVA

Sequences:

>Translated_378_residues
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPALYKSEHPYLKEVDSLALANV
YLDLELAYKRFFDKKGGYPKFKSLKKSRKSYTTNNQNGTIAITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDS
LYFVSVIFEYEENIDKTTNFDNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNEKKSNNYLK
QLKKVNKIHRHIANQRLDNLHKKSNEIANRYDVVCVENLNMRNMSNKGFRNGKATMDNGYGMFLNLLAYKLNDRGKYLIK
VDKWYPSSQICSLCGSKKKLALNERTYICECGNIIDRDLNAAINIKREGLRLLKEMVA
>Mature_378_residues
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPALYKSEHPYLKEVDSLALANV
YLDLELAYKRFFDKKGGYPKFKSLKKSRKSYTTNNQNGTIAITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDS
LYFVSVIFEYEENIDKTTNFDNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNEKKSNNYLK
QLKKVNKIHRHIANQRLDNLHKKSNEIANRYDVVCVENLNMRNMSNKGFRNGKATMDNGYGMFLNLLAYKLNDRGKYLIK
VDKWYPSSQICSLCGSKKKLALNERTYICECGNIIDRDLNAAINIKREGLRLLKEMVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=372, Percent_Identity=29.8387096774194, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44015; Mature: 44015

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPA
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCCC
LYKSEHPYLKEVDSLALANVYLDLELAYKRFFDKKGGYPKFKSLKKSRKSYTTNNQNGTI
HHCCCCCHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEE
AITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDSLYFVSVIFEYEENIDKTTNF
EEECCCEECCCCCCEEHHCCCCCCCCCEECCEEEEEECCCEEEEHHHHHHHHCCCCCCCC
DNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNEKKSNNYLK
CCEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
QLKKVNKIHRHIANQRLDNLHKKSNEIANRYDVVCVENLNMRNMSNKGFRNGKATMDNGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
GMFLNLLAYKLNDRGKYLIKVDKWYPSSQICSLCGSKKKLALNERTYICECGNIIDRDLN
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCEEEEECCCHHHHCCC
AAINIKREGLRLLKEMVA
HHEEECHHHHHHHHHHHC
>Mature Secondary Structure
MRKKKGVKNKAIKYRLYPTTEQEIYFSKCFGCCRKIWNLMLCDREKSYKETGKSVKNTPA
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCCC
LYKSEHPYLKEVDSLALANVYLDLELAYKRFFDKKGGYPKFKSLKKSRKSYTTNNQNGTI
HHCCCCCHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEE
AITDNAIKLPKAGFVKAKIHRQPKSDWKLKSATIFQTTDSLYFVSVIFEYEENIDKTTNF
EEECCCEECCCCCCEEHHCCCCCCCCCEECCEEEEEECCCEEEEHHHHHHHHCCCCCCCC
DNCIGLDYKSDGLYMDSFGNVGDNHKFYRESHKKLAKEQRRLSRKIGSKKNEKKSNNYLK
CCEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
QLKKVNKIHRHIANQRLDNLHKKSNEIANRYDVVCVENLNMRNMSNKGFRNGKATMDNGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
GMFLNLLAYKLNDRGKYLIKVDKWYPSSQICSLCGSKKKLALNERTYICECGNIIDRDLN
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCEEEEECCCHHHHCCC
AAINIKREGLRLLKEMVA
HHEEECHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]