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The map label for this gene is rpe [H]

Identifier: 167625981

GI number: 167625981

Start: 4962519

End: 4963193

Strand: Reverse

Name: rpe [H]

Synonym: Shal_4076

Alternate gene names: 167625981

Gene position: 4963193-4962519 (Counterclockwise)

Preceding gene: 167625984

Following gene: 167625980

Centisome position: 94.95

GC content: 44.59

Gene sequence:

>675_bases
ATGCGTCCATTTTTGATTGCTCCTTCTATTTTATCTGCTGATTTTGCTCGTTTAGGTGAAGATGTCGATGCCGTATTAAA
CGCGGGGGCTGATGTGGTTCATTTTGATGTTATGGATAATCATTATGTGCCAAATTTAACGATTGGGCCTATGGTGTGCC
AAGCCTTGCGTAATTATGGCGTCACTGCCGATATTGACGTTCACCTAATGGTGAAGCCTGTTGACCGTATCATTCCTGAT
TTTGCTGCAGCCGGTGCTTCAATTATTACTTTCCATCCTGAAGCCTCTGAGCATGTGGACCGTACTCTGCAGTTAATTAA
AGAATCTGGCTGTAAAGCGGGGCTAGTGTTTAACCCTGCTACACCACTGCACTATCTTGATCACGTGATGGATAAGTTAG
ATGTGATTTTGCTGATGTCAGTTAACCCAGGCTTTGGTGGGCAGTCATTTATTCCGTCTACTTTCGATAAGTTGCGTCAG
GTGCGTAAGCTGATTGATGACAGTGGTTACGACATCCGTTTACAAGTAGATGGCGGCGTAAAGGTCGACAATATTGCTGA
AATCGCAGCAGCGGGTGCAGACATGTTTGTTGCAGGTTCAGCCATTTTCAATAAGCCAGACTACAAAGCAGTAATTGATG
AGATGCGTGCAGAATTAGCAAGCGTTGAGGCGTAA

Upstream 100 bases:

>100_bases
TTTATCCCTGCAATTTAACTGAAATGGGCGCTCAGGTGTGGAGGGCTATGGCTGCAGCAGGTAGAATAGCGTACTTCTTA
AACATTCAGGTGAGTTCGTT

Downstream 100 bases:

>100_bases
TCAGTGAATACTTTTAGTCAAATAAAAGCGGTAGCATTTGACTTGGATGGAACGCTAATCGATAGCGTTCCCGATCTTGC
TGCAGCGACTCGTGCAACCC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRPFLIAPSILSADFARLGEDVDAVLNAGADVVHFDVMDNHYVPNLTIGPMVCQALRNYGVTADIDVHLMVKPVDRIIPD
FAAAGASIITFHPEASEHVDRTLQLIKESGCKAGLVFNPATPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTFDKLRQ
VRKLIDDSGYDIRLQVDGGVKVDNIAEIAAAGADMFVAGSAIFNKPDYKAVIDEMRAELASVEA

Sequences:

>Translated_224_residues
MRPFLIAPSILSADFARLGEDVDAVLNAGADVVHFDVMDNHYVPNLTIGPMVCQALRNYGVTADIDVHLMVKPVDRIIPD
FAAAGASIITFHPEASEHVDRTLQLIKESGCKAGLVFNPATPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTFDKLRQ
VRKLIDDSGYDIRLQVDGGVKVDNIAEIAAAGADMFVAGSAIFNKPDYKAVIDEMRAELASVEA
>Mature_224_residues
MRPFLIAPSILSADFARLGEDVDAVLNAGADVVHFDVMDNHYVPNLTIGPMVCQALRNYGVTADIDVHLMVKPVDRIIPD
FAAAGASIITFHPEASEHVDRTLQLIKESGCKAGLVFNPATPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTFDKLRQ
VRKLIDDSGYDIRLQVDGGVKVDNIAEIAAAGADMFVAGSAIFNKPDYKAVIDEMRAELASVEA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=212, Percent_Identity=40.0943396226415, Blast_Score=158, Evalue=4e-39,
Organism=Homo sapiens, GI219879828, Length=212, Percent_Identity=38.6792452830189, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=85.5855855855856, Blast_Score=393, Evalue=1e-111,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=36.318407960199, Blast_Score=140, Evalue=6e-35,
Organism=Escherichia coli, GI1790754, Length=211, Percent_Identity=30.3317535545024, Blast_Score=100, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=221, Percent_Identity=41.1764705882353, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=229, Percent_Identity=38.4279475982533, Blast_Score=155, Evalue=5e-39,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=39.8104265402844, Blast_Score=154, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24249; Mature: 24249

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPFLIAPSILSADFARLGEDVDAVLNAGADVVHFDVMDNHYVPNLTIGPMVCQALRNYG
CCCCEECCHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
VTADIDVHLMVKPVDRIIPDFAAAGASIITFHPEASEHVDRTLQLIKESGCKAGLVFNPA
CEECEEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
TPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTFDKLRQVRKLIDDSGYDIRLQVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFNKPDYKAVIDEMRAELASVEA
CHHHHHHHHHCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPFLIAPSILSADFARLGEDVDAVLNAGADVVHFDVMDNHYVPNLTIGPMVCQALRNYG
CCCCEECCHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
VTADIDVHLMVKPVDRIIPDFAAAGASIITFHPEASEHVDRTLQLIKESGCKAGLVFNPA
CEECEEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
TPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTFDKLRQVRKLIDDSGYDIRLQVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFNKPDYKAVIDEMRAELASVEA
CHHHHHHHHHCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]