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The map label for this gene is frdC [H]

Identifier: 167625803

GI number: 167625803

Start: 4732056

End: 4732730

Strand: Reverse

Name: frdC [H]

Synonym: Shal_3898

Alternate gene names: 167625803

Gene position: 4732730-4732056 (Counterclockwise)

Preceding gene: 167625804

Following gene: 167625802

Centisome position: 90.55

GC content: 48.15

Gene sequence:

>675_bases
ATGAAAAAAATAACAGATCGCGGTAATTGGAGTGGAAGGTTGGACTTGAGCCAGAGTATCTCTGGTGGCGTGTTGGCAAT
ATTTTTATGGACACACTTAATTTTGGTCTCCTCTATCCTCTTGGGAGAAGAGGCCATGACTTGGGTGGCTAAAACCATGG
AGCTGAGCTTCTTGAGCGCAGATGGACATGGATACCCCTGGGTCGTGTCGATTATAGTCCTATTGATTGCGGCCATTGTA
TTGGTGCATGTCTTGGTGGCTATCCATAAGTTACCGTTTAGTCTGCGTCAGCAAAAGGCGTTAAGACAGCAGCTTAGCCT
AGTTAATCACGGTGATACACGTTTATGGGTATGGCAGGCGATAACGGGCGTGGTGATTTTACTATTACTACCCGTGCATT
TATGGCTGATAGGGTCAGCGCCCGAGACGATTGGCCCCCATGGCAGTGCTGATAGAATTTGGCAGCAGGGGGCGTGGCTG
TTGTATCTGCCGTTGTTACTCTGTGTTGAGCTTCATGCCGCGATTGGTGTTTACCGCCTAGCGGTGAAATGGGGCGTAGC
GAGAGACATAAATACCCGCGAAAGACTGAAAAAAATAAAAACTATCATCAGTGTGGTTTTCATTGTTGTGGGCCTGGCGT
CACTACTGGCGTTCTTGCCTTACGCCAATGTGTAA

Upstream 100 bases:

>100_bases
CGAATTTTTGTTGATCTATCTCACGGTTAAATACCTATTATTGCGCGACATTGTAACCAAATGGTTAACGGGCTGGGTAT
TTATCAAGGATGGGCAGCGA

Downstream 100 bases:

>100_bases
ACTGCTGATAATAAAAAAACATAAACTGACTCTGCACCCTACTTTAAGGAGCACGTGTGAAACTGATATATACCGATTCA
TTAGTGATCGGCGCCGGACT

Product: fumarate reductase respiratory complex transmembrane subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKKITDRGNWSGRLDLSQSISGGVLAIFLWTHLILVSSILLGEEAMTWVAKTMELSFLSADGHGYPWVVSIIVLLIAAIV
LVHVLVAIHKLPFSLRQQKALRQQLSLVNHGDTRLWVWQAITGVVILLLLPVHLWLIGSAPETIGPHGSADRIWQQGAWL
LYLPLLLCVELHAAIGVYRLAVKWGVARDINTRERLKKIKTIISVVFIVVGLASLLAFLPYANV

Sequences:

>Translated_224_residues
MKKITDRGNWSGRLDLSQSISGGVLAIFLWTHLILVSSILLGEEAMTWVAKTMELSFLSADGHGYPWVVSIIVLLIAAIV
LVHVLVAIHKLPFSLRQQKALRQQLSLVNHGDTRLWVWQAITGVVILLLLPVHLWLIGSAPETIGPHGSADRIWQQGAWL
LYLPLLLCVELHAAIGVYRLAVKWGVARDINTRERLKKIKTIISVVFIVVGLASLLAFLPYANV
>Mature_224_residues
MKKITDRGNWSGRLDLSQSISGGVLAIFLWTHLILVSSILLGEEAMTWVAKTMELSFLSADGHGYPWVVSIIVLLIAAIV
LVHVLVAIHKLPFSLRQQKALRQQLSLVNHGDTRLWVWQAITGVVILLLLPVHLWLIGSAPETIGPHGSADRIWQQGAWL
LYLPLLLCVELHAAIGVYRLAVKWGVARDINTRERLKKIKTIISVVFIVVGLASLLAFLPYANV

Specific function: Di-heme cytochrome of the fumarate reductase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004224
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 24853; Mature: 24853

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITDRGNWSGRLDLSQSISGGVLAIFLWTHLILVSSILLGEEAMTWVAKTMELSFLSA
CCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
DGHGYPWVVSIIVLLIAAIVLVHVLVAIHKLPFSLRQQKALRQQLSLVNHGDTRLWVWQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ITGVVILLLLPVHLWLIGSAPETIGPHGSADRIWQQGAWLLYLPLLLCVELHAAIGVYRL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AVKWGVARDINTRERLKKIKTIISVVFIVVGLASLLAFLPYANV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKITDRGNWSGRLDLSQSISGGVLAIFLWTHLILVSSILLGEEAMTWVAKTMELSFLSA
CCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
DGHGYPWVVSIIVLLIAAIVLVHVLVAIHKLPFSLRQQKALRQQLSLVNHGDTRLWVWQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ITGVVILLLLPVHLWLIGSAPETIGPHGSADRIWQQGAWLLYLPLLLCVELHAAIGVYRL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AVKWGVARDINTRERLKKIKTIISVVFIVVGLASLLAFLPYANV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]