Click here to switch to the map view.

The map label for this gene is yaaJ [C]

Identifier: 167625724

GI number: 167625724

Start: 4631003

End: 4632382

Strand: Reverse

Name: yaaJ [C]

Synonym: Shal_3819

Alternate gene names: 167625724

Gene position: 4632382-4631003 (Counterclockwise)

Preceding gene: 167625725

Following gene: 167625718

Centisome position: 88.63

GC content: 48.12

Gene sequence:

>1380_bases
ATGGAAGCTATTACTGATTTTGTAGGCATGATCAACGGCGTGGTCTGGGGGACACCCATGTTGGTTATGATTTTAGGTGT
GGGCTTATTTTTAACAGTGGGTTTGCGTTTGATGCCAATTTTAAAACTCGGCACCGGATTTAAACTCTTATGGTCTGGGC
GTATTCCCGATAAAGATAAGAGGATGAAGGGGGAAATTAGCCCTTTTAATGCCTTAATGACCTCACTGTCAGCCACCATA
GGTACCGGTAATATTGCCGGTGTTGCTACTGCGATTTTTATCGGCGGACCGGGTGCGTTATTTTGGATGTGGTGTACGGC
GCTGGTGGGCATGGCAACAAAGTTTGCCGAAGCCGTATTAGCGGTTAAATACCGTGAAGTGGATGACAATGGTAACCACG
TTGGTGGCCCAATGTACTACATCAAAAATGGACTAGGTTCGAAGTGGGCGTGGTTAGGGACCGCTTTTGCACTGTTTGGC
TCGCTAGCGGGTTTTGGTATTGGTAATACTGTGCAGGCTAACTCTGTAGCCGATGCGCTTAGCAGTAACTTTGGTGTGCC
TAATTGGATCACAGGCGTTGTGCTAATGGTATTGGTTGGTGCAGTGCTAATGGGCGGTATTAAGCGTATTGCCGATGTTG
CTGGCAAATTAGTGCCTATGATGACGGTATTTTATATTGCGGCAGGTATTGCGGTATTGGTGGTCTATGCCGCTGAGATC
CCTGCTGCCATTGAGTTGATCTTACACAGTGCCTTTAATCCAGTGGCTGCACAAGGTGGTTTTGCCGGAGCGGCGGTTTG
GGCTGCAATTCGTTTTGGTGTTGCGCGTGGTGTGTTCTCCAATGAGGCGGGTCTGGGTAGTGCGCCTATCGCTCACGCGG
CAGCGCAAACAAATAATCCGGTTGCTCAGGGCTTAGTCGCTATGTTGGGCACATTTATCGATACCTTGATTGTTTGTAGC
ATTACTGGCTTGGCAATTATCGTATCGGGAGCCTGGACCTCGGGTGAAAATGGCGCGGCGCTCACCTCGTTTGCCTTTTC
TCATGCTTTCCCGCTTGGAAACTATGTGGTAGCGATTGCCCTAAGCGTATTTGCGTTTACGACTATCTTAGGTTGGAGCT
TTTACTGTGAGAAGTGTGTGCAGTTCCTATTTGGCGTGAAAGCGATTAAGCCATTTAGAATCGTTTGGACCTTAGTGGTA
CCATTAGGTGCGGTGAGTTCACTCGAGTTTATCTGGCTGTTGGCCGATACCCTCAACGCTATGATGGCGATCCCTAACTT
GATAGCTTTAGCATTGCTTAGCCCTGTAGTATTTGCGTTAACCAGGGAGTATTTTCTGAAGAAGCGTGAGACGGATTTGG
AATCGCAAAAAGCGAAATAG

Upstream 100 bases:

>100_bases
TAGTCTAATTCAAGATCAAAAATGCAAGATCAAAAAGCCCTAAATACATGATTATAAATATAAATAATAACGATAAATTC
TCTGTATCGACGAGGTTTGA

Downstream 100 bases:

>100_bases
GCAATTATTGGATGTTTAAAAACTAAAAAAGCTCCTGGATAGTATCTCAGGAGCTTTTTTTATTACGCTATTTTAAGTTT
ATGCCCAAAAGTCATCTTCA

Product: amino acid carrier protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MEAITDFVGMINGVVWGTPMLVMILGVGLFLTVGLRLMPILKLGTGFKLLWSGRIPDKDKRMKGEISPFNALMTSLSATI
GTGNIAGVATAIFIGGPGALFWMWCTALVGMATKFAEAVLAVKYREVDDNGNHVGGPMYYIKNGLGSKWAWLGTAFALFG
SLAGFGIGNTVQANSVADALSSNFGVPNWITGVVLMVLVGAVLMGGIKRIADVAGKLVPMMTVFYIAAGIAVLVVYAAEI
PAAIELILHSAFNPVAAQGGFAGAAVWAAIRFGVARGVFSNEAGLGSAPIAHAAAQTNNPVAQGLVAMLGTFIDTLIVCS
ITGLAIIVSGAWTSGENGAALTSFAFSHAFPLGNYVVAIALSVFAFTTILGWSFYCEKCVQFLFGVKAIKPFRIVWTLVV
PLGAVSSLEFIWLLADTLNAMMAIPNLIALALLSPVVFALTREYFLKKRETDLESQKAK

Sequences:

>Translated_459_residues
MEAITDFVGMINGVVWGTPMLVMILGVGLFLTVGLRLMPILKLGTGFKLLWSGRIPDKDKRMKGEISPFNALMTSLSATI
GTGNIAGVATAIFIGGPGALFWMWCTALVGMATKFAEAVLAVKYREVDDNGNHVGGPMYYIKNGLGSKWAWLGTAFALFG
SLAGFGIGNTVQANSVADALSSNFGVPNWITGVVLMVLVGAVLMGGIKRIADVAGKLVPMMTVFYIAAGIAVLVVYAAEI
PAAIELILHSAFNPVAAQGGFAGAAVWAAIRFGVARGVFSNEAGLGSAPIAHAAAQTNNPVAQGLVAMLGTFIDTLIVCS
ITGLAIIVSGAWTSGENGAALTSFAFSHAFPLGNYVVAIALSVFAFTTILGWSFYCEKCVQFLFGVKAIKPFRIVWTLVV
PLGAVSSLEFIWLLADTLNAMMAIPNLIALALLSPVVFALTREYFLKKRETDLESQKAK
>Mature_459_residues
MEAITDFVGMINGVVWGTPMLVMILGVGLFLTVGLRLMPILKLGTGFKLLWSGRIPDKDKRMKGEISPFNALMTSLSATI
GTGNIAGVATAIFIGGPGALFWMWCTALVGMATKFAEAVLAVKYREVDDNGNHVGGPMYYIKNGLGSKWAWLGTAFALFG
SLAGFGIGNTVQANSVADALSSNFGVPNWITGVVLMVLVGAVLMGGIKRIADVAGKLVPMMTVFYIAAGIAVLVVYAAEI
PAAIELILHSAFNPVAAQGGFAGAAVWAAIRFGVARGVFSNEAGLGSAPIAHAAAQTNNPVAQGLVAMLGTFIDTLIVCS
ITGLAIIVSGAWTSGENGAALTSFAFSHAFPLGNYVVAIALSVFAFTTILGWSFYCEKCVQFLFGVKAIKPFRIVWTLVV
PLGAVSSLEFIWLLADTLNAMMAIPNLIALALLSPVVFALTREYFLKKRETDLESQKAK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=454, Percent_Identity=37.0044052863436, Blast_Score=243, Evalue=1e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 48247; Mature: 48247

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAITDFVGMINGVVWGTPMLVMILGVGLFLTVGLRLMPILKLGTGFKLLWSGRIPDKDK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
RMKGEISPFNALMTSLSATIGTGNIAGVATAIFIGGPGALFWMWCTALVGMATKFAEAVL
HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHH
AVKYREVDDNGNHVGGPMYYIKNGLGSKWAWLGTAFALFGSLAGFGIGNTVQANSVADAL
HHHHHEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
SSNFGVPNWITGVVLMVLVGAVLMGGIKRIADVAGKLVPMMTVFYIAAGIAVLVVYAAEI
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAAIELILHSAFNPVAAQGGFAGAAVWAAIRFGVARGVFSNEAGLGSAPIAHAAAQTNNP
HHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCH
VAQGLVAMLGTFIDTLIVCSITGLAIIVSGAWTSGENGAALTSFAFSHAFPLGNYVVAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
LSVFAFTTILGWSFYCEKCVQFLFGVKAIKPFRIVWTLVVPLGAVSSLEFIWLLADTLNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMAIPNLIALALLSPVVFALTREYFLKKRETDLESQKAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure
MEAITDFVGMINGVVWGTPMLVMILGVGLFLTVGLRLMPILKLGTGFKLLWSGRIPDKDK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
RMKGEISPFNALMTSLSATIGTGNIAGVATAIFIGGPGALFWMWCTALVGMATKFAEAVL
HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHH
AVKYREVDDNGNHVGGPMYYIKNGLGSKWAWLGTAFALFGSLAGFGIGNTVQANSVADAL
HHHHHEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
SSNFGVPNWITGVVLMVLVGAVLMGGIKRIADVAGKLVPMMTVFYIAAGIAVLVVYAAEI
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAAIELILHSAFNPVAAQGGFAGAAVWAAIRFGVARGVFSNEAGLGSAPIAHAAAQTNNP
HHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCH
VAQGLVAMLGTFIDTLIVCSITGLAIIVSGAWTSGENGAALTSFAFSHAFPLGNYVVAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
LSVFAFTTILGWSFYCEKCVQFLFGVKAIKPFRIVWTLVVPLGAVSSLEFIWLLADTLNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMAIPNLIALALLSPVVFALTREYFLKKRETDLESQKAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]