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The map label for this gene is ygeZ [C]

Identifier: 167625667

GI number: 167625667

Start: 4567558

End: 4569165

Strand: Reverse

Name: ygeZ [C]

Synonym: Shal_3762

Alternate gene names: 167625667

Gene position: 4569165-4567558 (Counterclockwise)

Preceding gene: 167625668

Following gene: 167625666

Centisome position: 87.42

GC content: 48.76

Gene sequence:

>1608_bases
ATGGCTGTTGGTATTAATTTAGGGATGGAGATAAGCGTGCGTCAGTTAATCAAAAACGCCACCGTCATAGATGGAACTGG
TGGGGCAGCTTTTAAAGGCGACGTTCTAATTGATAATCAGTTGATTATTGATGTGGCACCGCTTATCGAACTTGCTGCTG
ACAGTGTCATCGATGCTGGTGGTGCCTATCTGACTCCAGGGTTTATTGATGTTCATAGTCACAGTGATTTAGCGACATTT
TTACCACAGGGATTTAAGCCAAAAGTGCTGCAAGGGATCACCACCGAGCTTATCGGTGTCTGCGGCCTTGGGGTCGCCCC
GCTACCCAAACCACTTCAGGCGGAGGTCAGAGAGCGCCTGATCATCGGTAACCCTAATATCGATTGGAGCTGGGACAGTT
TCAGCAGCTATGGCGCTGCCCTTAAACGGCATGGGCTGGAGGTCAATCTGTCTGCCTTTGTTCCCCACGGCTTATTGCGT
TATCAGATCTGCGGTAATAGCAGTTTGACGATGGATGGCTCTCAGAGAGAAAGGCTGGCTCAGCTAGCTGATCAAGCCTT
AAGTGAAGGGGCTCTTGGGATCAGCTTAGGGCTCATCTACCACCCGGCGCTGTTTAGTGACAAGCGTGAGCTATTAACTC
TGGCTCAAGTCGCTGCTAAACACCATAAACCCTTAGTTGTGCATATGCGCAGCGAAAGCGATGAGGTTATTGAGGCGTTG
CAGGAGATGATTATCCTGTCGCAACAGGCTGGGTGCCAGCTGCATATCTCTCACCTAAAGCTAATCGGGCGACGAAATGC
TGCTAAAGTATCAAGGTTACTGGCACTGATTGATCGCCATGAACTGACATTTGATCAATATCCATATAACTACGGCAGCA
CAACACTGCTCTCTATTTTACCGCCTAGCCTTATTCGCACATACGAACCCGATGCCTTGATGATTGCCCTGAAAAAAGCG
GAGATCAGACAGCAAGTTCGAGATTGGTTTGCTGAGCGGATTTTGCCTCAGGCTGGTGAGCCATGGGACAACCTGCCTGC
TCTGTTGGGCTGGGAAAATATCTTAATCTGTGAAGTGGGATCTCAGAGCGCAAAGCAGTGGTTAGGATGTTCTATTACTG
AGTGCGCACAAAAAATGGATCAGCACCCTGTTGATTTTGCACTTGACCTTCTTGTTAGCGAGCGAGGAAATGTGCGTATG
ATTGATTACTTTATGGATGAGGAGCTAGTTGAGCAGATCTTTCAGCACCCTAGGGGGATGGTTGGTACAGATACCATATT
TGGAGGGCATCTTCACCCAAGAGTTAGTGGGTCATTTCCACGGATTATTCAACGGTTTGTCTCGCAGCGTCAGCTACTGC
CACTTGAGCAGGCCGTACATAAGATGACCGGTTTGAGTGCAGAGACTTTTTCGCTCCACAAGCGAGGCAGGTTAGCGCCG
GGCTACTATGCCGATATCAGCTTGTTTGATGCTAGTTTTAGTGACAATTCAACGATAGATAAGCCTGATGCCTATGCAAC
GGGGTTGCGTGATTTGTGGGTGAATGGCAAGCGAAAAGTGAAGCAGGGTGAGTATCTAGAAATCCGCAGTGGCGAGCTGT
TACTGTAG

Upstream 100 bases:

>100_bases
CCCGGTTAGTCAAGATGATTATTAATGGGTGGCTTAGCTGTTTGGTTTTTATTTCAAAATCTTATCCTTATCTCATTTAT
TGCATAATTATTAAACTATC

Downstream 100 bases:

>100_bases
CGGCAGCTCATTTTGAGCTGGATAGACTAGTTATGCCATTGATTAAGAATGGGTGGCTAGGCTGTCATTTACAATTCAAG
GCGTTACAACTAGTCATATC

Product: N-acyl-D-aspartate deacylase

Products: NA

Alternate protein names: N-acyl-D-glutamate amidohydrolase [H]

Number of amino acids: Translated: 535; Mature: 534

Protein sequence:

>535_residues
MAVGINLGMEISVRQLIKNATVIDGTGGAAFKGDVLIDNQLIIDVAPLIELAADSVIDAGGAYLTPGFIDVHSHSDLATF
LPQGFKPKVLQGITTELIGVCGLGVAPLPKPLQAEVRERLIIGNPNIDWSWDSFSSYGAALKRHGLEVNLSAFVPHGLLR
YQICGNSSLTMDGSQRERLAQLADQALSEGALGISLGLIYHPALFSDKRELLTLAQVAAKHHKPLVVHMRSESDEVIEAL
QEMIILSQQAGCQLHISHLKLIGRRNAAKVSRLLALIDRHELTFDQYPYNYGSTTLLSILPPSLIRTYEPDALMIALKKA
EIRQQVRDWFAERILPQAGEPWDNLPALLGWENILICEVGSQSAKQWLGCSITECAQKMDQHPVDFALDLLVSERGNVRM
IDYFMDEELVEQIFQHPRGMVGTDTIFGGHLHPRVSGSFPRIIQRFVSQRQLLPLEQAVHKMTGLSAETFSLHKRGRLAP
GYYADISLFDASFSDNSTIDKPDAYATGLRDLWVNGKRKVKQGEYLEIRSGELLL

Sequences:

>Translated_535_residues
MAVGINLGMEISVRQLIKNATVIDGTGGAAFKGDVLIDNQLIIDVAPLIELAADSVIDAGGAYLTPGFIDVHSHSDLATF
LPQGFKPKVLQGITTELIGVCGLGVAPLPKPLQAEVRERLIIGNPNIDWSWDSFSSYGAALKRHGLEVNLSAFVPHGLLR
YQICGNSSLTMDGSQRERLAQLADQALSEGALGISLGLIYHPALFSDKRELLTLAQVAAKHHKPLVVHMRSESDEVIEAL
QEMIILSQQAGCQLHISHLKLIGRRNAAKVSRLLALIDRHELTFDQYPYNYGSTTLLSILPPSLIRTYEPDALMIALKKA
EIRQQVRDWFAERILPQAGEPWDNLPALLGWENILICEVGSQSAKQWLGCSITECAQKMDQHPVDFALDLLVSERGNVRM
IDYFMDEELVEQIFQHPRGMVGTDTIFGGHLHPRVSGSFPRIIQRFVSQRQLLPLEQAVHKMTGLSAETFSLHKRGRLAP
GYYADISLFDASFSDNSTIDKPDAYATGLRDLWVNGKRKVKQGEYLEIRSGELLL
>Mature_534_residues
AVGINLGMEISVRQLIKNATVIDGTGGAAFKGDVLIDNQLIIDVAPLIELAADSVIDAGGAYLTPGFIDVHSHSDLATFL
PQGFKPKVLQGITTELIGVCGLGVAPLPKPLQAEVRERLIIGNPNIDWSWDSFSSYGAALKRHGLEVNLSAFVPHGLLRY
QICGNSSLTMDGSQRERLAQLADQALSEGALGISLGLIYHPALFSDKRELLTLAQVAAKHHKPLVVHMRSESDEVIEALQ
EMIILSQQAGCQLHISHLKLIGRRNAAKVSRLLALIDRHELTFDQYPYNYGSTTLLSILPPSLIRTYEPDALMIALKKAE
IRQQVRDWFAERILPQAGEPWDNLPALLGWENILICEVGSQSAKQWLGCSITECAQKMDQHPVDFALDLLVSERGNVRMI
DYFMDEELVEQIFQHPRGMVGTDTIFGGHLHPRVSGSFPRIIQRFVSQRQLLPLEQAVHKMTGLSAETFSLHKRGRLAPG
YYADISLFDASFSDNSTIDKPDAYATGLRDLWVNGKRKVKQGEYLEIRSGELLL

Specific function: Unknown

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.82 [H]

Molecular weight: Translated: 59148; Mature: 59017

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVGINLGMEISVRQLIKNATVIDGTGGAAFKGDVLIDNQLIIDVAPLIELAADSVIDAG
CEEEECCCCCHHHHHHHHCCEEEECCCCCCEECCEEECCEEEEHHHHHHHHHHHHHHCCC
GAYLTPGFIDVHSHSDLATFLPQGFKPKVLQGITTELIGVCGLGVAPLPKPLQAEVRERL
CCEECCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCE
IIGNPNIDWSWDSFSSYGAALKRHGLEVNLSAFVPHGLLRYQICGNSSLTMDGSQRERLA
EECCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHCCCCEEEEEEECCCCEEECCHHHHHHH
QLADQALSEGALGISLGLIYHPALFSDKRELLTLAQVAAKHHKPLVVHMRSESDEVIEAL
HHHHHHHHCCCCEEEEHHHHCCHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
QEMIILSQQAGCQLHISHLKLIGRRNAAKVSRLLALIDRHELTFDQYPYNYGSTTLLSIL
HHHHHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHC
PPSLIRTYEPDALMIALKKAEIRQQVRDWFAERILPQAGEPWDNLPALLGWENILICEVG
CHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHCCCCEEEEECC
SQSAKQWLGCSITECAQKMDQHPVDFALDLLVSERGNVRMIDYFMDEELVEQIFQHPRGM
CHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEHHHHCHHHHHHHHHCCCCC
VGTDTIFGGHLHPRVSGSFPRIIQRFVSQRQLLPLEQAVHKMTGLSAETFSLHKRGRLAP
CCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCC
GYYADISLFDASFSDNSTIDKPDAYATGLRDLWVNGKRKVKQGEYLEIRSGELLL
CCEEEEEEEECCCCCCCCCCCCCHHHHCHHHHHCCCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
AVGINLGMEISVRQLIKNATVIDGTGGAAFKGDVLIDNQLIIDVAPLIELAADSVIDAG
EEEECCCCCHHHHHHHHCCEEEECCCCCCEECCEEECCEEEEHHHHHHHHHHHHHHCCC
GAYLTPGFIDVHSHSDLATFLPQGFKPKVLQGITTELIGVCGLGVAPLPKPLQAEVRERL
CCEECCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCE
IIGNPNIDWSWDSFSSYGAALKRHGLEVNLSAFVPHGLLRYQICGNSSLTMDGSQRERLA
EECCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHCCCCEEEEEEECCCCEEECCHHHHHHH
QLADQALSEGALGISLGLIYHPALFSDKRELLTLAQVAAKHHKPLVVHMRSESDEVIEAL
HHHHHHHHCCCCEEEEHHHHCCHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
QEMIILSQQAGCQLHISHLKLIGRRNAAKVSRLLALIDRHELTFDQYPYNYGSTTLLSIL
HHHHHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHC
PPSLIRTYEPDALMIALKKAEIRQQVRDWFAERILPQAGEPWDNLPALLGWENILICEVG
CHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHCCCCEEEEECC
SQSAKQWLGCSITECAQKMDQHPVDFALDLLVSERGNVRMIDYFMDEELVEQIFQHPRGM
CHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEHHHHCHHHHHHHHHCCCCC
VGTDTIFGGHLHPRVSGSFPRIIQRFVSQRQLLPLEQAVHKMTGLSAETFSLHKRGRLAP
CCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCC
GYYADISLFDASFSDNSTIDKPDAYATGLRDLWVNGKRKVKQGEYLEIRSGELLL
CCEEEEEEEECCCCCCCCCCCCCHHHHCHHHHHCCCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8537313 [H]