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The map label for this gene is oppF2 [H]

Identifier: 167625629

GI number: 167625629

Start: 4521789

End: 4522379

Strand: Reverse

Name: oppF2 [H]

Synonym: Shal_3724

Alternate gene names: 167625629

Gene position: 4522379-4521789 (Counterclockwise)

Preceding gene: 167625630

Following gene: 167625628

Centisome position: 86.52

GC content: 50.93

Gene sequence:

>591_bases
ATGCTAACGCTGCGTAATGGTTATCTACACCGTCGCAATAAGAGGATTGAATTTCCCGATATCTATTTGCCGCGGGGTGA
GGTATTGGGGATCTCTGGTCCCAGCGGTGTAGGTAAGTCATCGTTAGCGAGTGTACTTGCGGGAATGATAACGGCCGATG
TCGAATTACTCGAGTTGCCAATGAGGCAGGTTAACCAAGCCAATCCAGTGCAGTGGTTAATCCAGCAGAGTGAGTTCGCC
TTTAATCCGCGGCTGACGTTAAAGGCTTCGTTAAATGAGAGCTGGAAAGGCGAGGCCTACCTGCCCCTGTTGAGTGAGTA
TGGTTTGGAGGCGTCTTGGTTAGCGAGACGACCTAACCAACTTTCTGGCGGCCAGCTACAGCGCTTTAATTTGATCCGGG
CGCTGGTACCGACCACTGAGTATTTGATCTGTGATGAAGTAACCGCTCATCTTGATATGGTGACCCAAGCCGAATTTTGG
CAACAGCTGCTCGTCTGTGCAAAGCGCCGCAATATAGGCCTGTTGGTGATCTCCCACGATGAGTACCTGCTCAACGCCAT
CTGTCAGCAGGTAATCAAGTGGCCACGATAA

Upstream 100 bases:

>100_bases
CTGGTTGAGATCACCACAGCTGCCAATATTCGTAACGGCACCTGCGACAGCTATACACAAAGTCTGTGGGCGGCTCTGCC
TGAGCACTGGGGGCTAACAA

Downstream 100 bases:

>100_bases
GCCTTCAATCTACCTTTTACCTATAATTCAACGCTTATATAGCTAATGCTTGTGTAGGCGGTGCTTTTGTACGTAACCGT
TATTTAGGCTCGGCGAATAT

Product: ABC transporter-like protein

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MLTLRNGYLHRRNKRIEFPDIYLPRGEVLGISGPSGVGKSSLASVLAGMITADVELLELPMRQVNQANPVQWLIQQSEFA
FNPRLTLKASLNESWKGEAYLPLLSEYGLEASWLARRPNQLSGGQLQRFNLIRALVPTTEYLICDEVTAHLDMVTQAEFW
QQLLVCAKRRNIGLLVISHDEYLLNAICQQVIKWPR

Sequences:

>Translated_196_residues
MLTLRNGYLHRRNKRIEFPDIYLPRGEVLGISGPSGVGKSSLASVLAGMITADVELLELPMRQVNQANPVQWLIQQSEFA
FNPRLTLKASLNESWKGEAYLPLLSEYGLEASWLARRPNQLSGGQLQRFNLIRALVPTTEYLICDEVTAHLDMVTQAEFW
QQLLVCAKRRNIGLLVISHDEYLLNAICQQVIKWPR
>Mature_196_residues
MLTLRNGYLHRRNKRIEFPDIYLPRGEVLGISGPSGVGKSSLASVLAGMITADVELLELPMRQVNQANPVQWLIQQSEFA
FNPRLTLKASLNESWKGEAYLPLLSEYGLEASWLARRPNQLSGGQLQRFNLIRALVPTTEYLICDEVTAHLDMVTQAEFW
QQLLVCAKRRNIGLLVISHDEYLLNAICQQVIKWPR

Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for energy coupling to the transport system. Important for S.aureus growth and survival during the infection process [H]

COG id: COG1124

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1789891, Length=191, Percent_Identity=35.0785340314136, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788506, Length=211, Percent_Identity=28.436018957346, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787500, Length=201, Percent_Identity=26.865671641791, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787758, Length=183, Percent_Identity=30.0546448087432, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI48994883, Length=192, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1786698, Length=196, Percent_Identity=30.1020408163265, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI145693107, Length=212, Percent_Identity=27.8301886792453, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789962, Length=190, Percent_Identity=27.3684210526316, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789963, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1787547, Length=205, Percent_Identity=25.3658536585366, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789890, Length=198, Percent_Identity=28.7878787878788, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1786398, Length=187, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788165, Length=170, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786253, Length=179, Percent_Identity=29.0502793296089, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 22272; Mature: 22272

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLRNGYLHRRNKRIEFPDIYLPRGEVLGISGPSGVGKSSLASVLAGMITADVELLELP
CCEECCCCHHHCCCCCCCCCEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
MRQVNQANPVQWLIQQSEFAFNPRLTLKASLNESWKGEAYLPLLSEYGLEASWLARRPNQ
HHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECHHHHHCCCCHHHHHCCCCC
LSGGQLQRFNLIRALVPTTEYLICDEVTAHLDMVTQAEFWQQLLVCAKRRNIGLLVISHD
CCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
EYLLNAICQQVIKWPR
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTLRNGYLHRRNKRIEFPDIYLPRGEVLGISGPSGVGKSSLASVLAGMITADVELLELP
CCEECCCCHHHCCCCCCCCCEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
MRQVNQANPVQWLIQQSEFAFNPRLTLKASLNESWKGEAYLPLLSEYGLEASWLARRPNQ
HHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECHHHHHCCCCHHHHHCCCCC
LSGGQLQRFNLIRALVPTTEYLICDEVTAHLDMVTQAEFWQQLLVCAKRRNIGLLVISHD
CCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
EYLLNAICQQVIKWPR
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA