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The map label for this gene is yiaD [H]

Identifier: 167625617

GI number: 167625617

Start: 4510145

End: 4510819

Strand: Reverse

Name: yiaD [H]

Synonym: Shal_3712

Alternate gene names: 167625617

Gene position: 4510819-4510145 (Counterclockwise)

Preceding gene: 167625619

Following gene: 167625616

Centisome position: 86.3

GC content: 47.26

Gene sequence:

>675_bases
ATGTGTGTTAAACGTAGTTCTTTTCTGGCTGGTGGCCTAATTGCTACCATGTTGGTTTCTGGTTGCCAAGTAACCAATCC
TTATACTAATGAATCTCAAAATGCTAAAGCGACTAACGGTGCCTTGATCGGTGCAATCGCGGGTGCGGCTATCGGGGTAG
CGTCATCGAGCAAAAATGATCGTGGTAAAGGGGCGTTGATCGGCGCAGCATCGGGCGCAGCATTGGGCGGTGGTATCGGC
TATTACATGGATGTGCAGGAAGCTGAATTACGTAAGCTGCTACAATCATCTGGTGTTAGCGTTACCCGTAGTGGGGATAA
TATTATTTTGAACATGCCAAATGATGTGACCTTTGGTGTGGATCAAACTGATTTAAGTCAACGTGCCCAGCAAGTGTTAA
ACAGTGTGGTGCTGGTAGCGCTTGAATATGATGAGACCAAGCTTAATGTGATGGGGTATACCGATAGCTCGGGTGCGGAA
TCTTATAACTTAAGATTGTCTCAAGTACGTGCTAGCGAGGTGGCTAACTACCTAACAAACCATAAGGTGCCTGCTCAACG
CGTAGCCTCGCATGGTATGGGTGAGTCAAAGCCTATCGCTTCTAACCAAACTAAGCAGGGGCGCGCTGAAAATCGTCGTG
TAGAGATTATTCTAAGCCCTATGCCAAACGCGTAA

Upstream 100 bases:

>100_bases
ACTCAGTTGCATTTTCATTGTCTAATTCACCGTGCTTTATATACTGATTTAAAATTGTGGTCGCTTTTGTTACTGGCAAA
GGCTGTTAGGGGTAGTAAAA

Downstream 100 bases:

>100_bases
CCAGCAATAGTTACAGCGATAAATGAAAGCCACGCTCGAGTGGCTTTTTTTGTGCCCTAAACTGGCTACTTATCGCTGTC
ATTTATACTAGGTAGAATAG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MCVKRSSFLAGGLIATMLVSGCQVTNPYTNESQNAKATNGALIGAIAGAAIGVASSSKNDRGKGALIGAASGAALGGGIG
YYMDVQEAELRKLLQSSGVSVTRSGDNIILNMPNDVTFGVDQTDLSQRAQQVLNSVVLVALEYDETKLNVMGYTDSSGAE
SYNLRLSQVRASEVANYLTNHKVPAQRVASHGMGESKPIASNQTKQGRAENRRVEIILSPMPNA

Sequences:

>Translated_224_residues
MCVKRSSFLAGGLIATMLVSGCQVTNPYTNESQNAKATNGALIGAIAGAAIGVASSSKNDRGKGALIGAASGAALGGGIG
YYMDVQEAELRKLLQSSGVSVTRSGDNIILNMPNDVTFGVDQTDLSQRAQQVLNSVVLVALEYDETKLNVMGYTDSSGAE
SYNLRLSQVRASEVANYLTNHKVPAQRVASHGMGESKPIASNQTKQGRAENRRVEIILSPMPNA
>Mature_224_residues
MCVKRSSFLAGGLIATMLVSGCQVTNPYTNESQNAKATNGALIGAIAGAAIGVASSSKNDRGKGALIGAASGAALGGGIG
YYMDVQEAELRKLLQSSGVSVTRSGDNIILNMPNDVTFGVDQTDLSQRAQQVLNSVVLVALEYDETKLNVMGYTDSSGAE
SYNLRLSQVRASEVANYLTNHKVPAQRVASHGMGESKPIASNQTKQGRAENRRVEIILSPMPNA

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=218, Percent_Identity=55.5045871559633, Blast_Score=193, Evalue=7e-51,
Organism=Escherichia coli, GI1788957, Length=127, Percent_Identity=33.0708661417323, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787191, Length=118, Percent_Identity=32.2033898305085, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23437; Mature: 23437

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCVKRSSFLAGGLIATMLVSGCQVTNPYTNESQNAKATNGALIGAIAGAAIGVASSSKND
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCC
RGKGALIGAASGAALGGGIGYYMDVQEAELRKLLQSSGVSVTRSGDNIILNMPNDVTFGV
CCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCEEEECCCEEEEECCCCEEECC
DQTDLSQRAQQVLNSVVLVALEYDETKLNVMGYTDSSGAESYNLRLSQVRASEVANYLTN
CHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHC
HKVPAQRVASHGMGESKPIASNQTKQGRAENRRVEIILSPMPNA
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MCVKRSSFLAGGLIATMLVSGCQVTNPYTNESQNAKATNGALIGAIAGAAIGVASSSKND
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCC
RGKGALIGAASGAALGGGIGYYMDVQEAELRKLLQSSGVSVTRSGDNIILNMPNDVTFGV
CCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCEEEECCCEEEEECCCCEEECC
DQTDLSQRAQQVLNSVVLVALEYDETKLNVMGYTDSSGAESYNLRLSQVRASEVANYLTN
CHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHC
HKVPAQRVASHGMGESKPIASNQTKQGRAENRRVEIILSPMPNA
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]