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The map label for this gene is dsdX [H]

Identifier: 167625468

GI number: 167625468

Start: 4345324

End: 4346661

Strand: Reverse

Name: dsdX [H]

Synonym: Shal_3562

Alternate gene names: 167625468

Gene position: 4346661-4345324 (Counterclockwise)

Preceding gene: 167625472

Following gene: 167625467

Centisome position: 83.16

GC content: 49.55

Gene sequence:

>1338_bases
ATGGAATCACAGCTCTGGATTATCGGTACTCTGCTTAGCAGTATCTTGTTGATTGTCATCAGCATCGTTAAGTTCAAGTT
GCATCCTTTCCTTGCGCTCTTGTTAGCCAGCTTCTTTGTTGGCGGCATGATGGGCATGGCGCCACTTGAAATGATCAAGG
CGATGGAGTCAGGTATTGGCGGCACATTAGGCTTCTTGGCTATCGTTATCGGTCTGGGTACCATCTTAGGTAAGATGATG
GAGATCTCTGGCGCTGCCGAGCGAATAGGCATCACCTTGCTAAAATCGCGCTACTTAAGCCCTGACGTCATCATGGTGTT
AGTCGGCCTTATCTGTGGTATCACCTTGTTCGTTGAAGTGGGCGTAGTACTGCTTATTCCACTGGCATTCTCTATTGCAC
GTAAAACCAATACCTCCCTGCTAAAGCTCGCCATTCCACTATGTACCGCCTTAATGGCCGTACACTGTATTGTGCCGCCG
CACCCTGCTGCATTGTTTGTGACTAACGCGCTCGGCGCCGATGTTGGCTCTGTTATTATCTGGGGTCTGCTAATCGGTCT
TGTGGCTTCTTTGATTGGCGGTCCACTGTTCCTTAAGTTGTTTGGCGATAAACTGCCACACTTAAGCGTGCCAGCTGAGT
TTAGTGAAGTCTCTGCTCGTAAAGAGAGTGAGTTGCCATCACTTGGCACTACCTTGTTCACTATCCTTTTGCCAATCATT
TTAATGCTGGTTAAAACCGTGGCCGAGCTGTACATGGAGCCGGGCACAGCCCTGTACACCACGCTTGAGTTTATCGGTAA
CCCAATCACCGCGATGTTTATCGCAGCATTTGTGGCTTACTACCTGCTAGGTCTTCGTAACAAGATGACTATGGCTACCT
TGCTGACTAAAACCGAAGATAGCTTTGCCTCTATCGCTAATATCTTGCTGATTATCGGTGCAGGTGGCGCGTTTAACGGC
GTACTGAGTGGCAGCGGCATGGGCGACAGCTTGGCGCAAATTCTGGCTAATCTTGATATGCACCCGGTGCTACTCGCTTG
GTTAGTTGCCATCATCTTGCATGCGGCGGTTGGCTCGGCAACGGTAGCTATGATGGGCGCAACCGCGATTGTGTCACCAC
TGTTGGTCCTTTACCCAGACTTAAACCCCGTTATCGTGACCTTGGCAATCGGCTCTGGCGCAATCGGCTGCACTATCGTT
ACCGACTCATTGTTCTGGCTGGTTAAGCAGTACACTGGCGCTACGATGAAACAAACATTTATGTATTACACCACTGCAAC
CTTTATCGCCTCACTTGTGGCATTGGCTGCGACCTTCGCCTTGTCTTACGTAATTTAA

Upstream 100 bases:

>100_bases
ATATCTTTTGTCAGCATTTCATTGATTGGCTTTAATAGCGCCACTTTCTATCGCTTGTTTCGATAGGTTTTTAACTTCTT
TCAACTCATAGAGATATACA

Downstream 100 bases:

>100_bases
TTCTGATAGTGGATTTGAAACAATGAATACTGCACAACTGATAAAAGATTTTCCTTTGCTAAGTAAGCTTATCAAGCTCG
AAGAAGTCAGCTGGTTTGAG

Product: permease DsdX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIGGTLGFLAIVIGLGTILGKMM
EISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEVGVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPP
HPAALFVTNALGADVGSVIIWGLLIGLVASLIGGPLFLKLFGDKLPHLSVPAEFSEVSARKESELPSLGTTLFTILLPII
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMATLLTKTEDSFASIANILLIIGAGGAFNG
VLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSATVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIV
TDSLFWLVKQYTGATMKQTFMYYTTATFIASLVALAATFALSYVI

Sequences:

>Translated_445_residues
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIGGTLGFLAIVIGLGTILGKMM
EISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEVGVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPP
HPAALFVTNALGADVGSVIIWGLLIGLVASLIGGPLFLKLFGDKLPHLSVPAEFSEVSARKESELPSLGTTLFTILLPII
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMATLLTKTEDSFASIANILLIIGAGGAFNG
VLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSATVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIV
TDSLFWLVKQYTGATMKQTFMYYTTATFIASLVALAATFALSYVI
>Mature_445_residues
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIGGTLGFLAIVIGLGTILGKMM
EISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEVGVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPP
HPAALFVTNALGADVGSVIIWGLLIGLVASLIGGPLFLKLFGDKLPHLSVPAEFSEVSARKESELPSLGTTLFTILLPII
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMATLLTKTEDSFASIANILLIIGAGGAFNG
VLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSATVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIV
TDSLFWLVKQYTGATMKQTFMYYTTATFIASLVALAATFALSYVI

Specific function: Probable permease for an unknown substrate [H]

COG id: COG2610

COG function: function code GE; H+/gluconate symporter and related permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gntP permease family [H]

Homologues:

Organism=Escherichia coli, GI1788707, Length=445, Percent_Identity=75.9550561797753, Blast_Score=678, Evalue=0.0,
Organism=Escherichia coli, GI1790716, Length=440, Percent_Identity=34.3181818181818, Blast_Score=248, Evalue=8e-67,
Organism=Escherichia coli, GI48994935, Length=436, Percent_Identity=34.1743119266055, Blast_Score=245, Evalue=4e-66,
Organism=Escherichia coli, GI2367370, Length=408, Percent_Identity=35.2941176470588, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1790776, Length=430, Percent_Identity=33.2558139534884, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI48994939, Length=419, Percent_Identity=36.7541766109785, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1789097, Length=447, Percent_Identity=31.5436241610738, Blast_Score=181, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003474 [H]

Pfam domain/function: PF02447 GntP_permease [H]

EC number: NA

Molecular weight: Translated: 46854; Mature: 46854

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTLGFLAIVIGLGTILGKMMEISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPPHPAALFVTNALGADVGSVII
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
WGLLIGLVASLIGGPLFLKLFGDKLPHLSVPAEFSEVSARKESELPSLGTTLFTILLPII
HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMATLLTKTED
HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCH
SFASIANILLIIGAGGAFNGVLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSA
HHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIVTDSLFWLVKQYTGATMKQTF
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
MYYTTATFIASLVALAATFALSYVI
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MESQLWIIGTLLSSILLIVISIVKFKLHPFLALLLASFFVGGMMGMAPLEMIKAMESGIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTLGFLAIVIGLGTILGKMMEISGAAERIGITLLKSRYLSPDVIMVLVGLICGITLFVEV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GVVLLIPLAFSIARKTNTSLLKLAIPLCTALMAVHCIVPPHPAALFVTNALGADVGSVII
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
WGLLIGLVASLIGGPLFLKLFGDKLPHLSVPAEFSEVSARKESELPSLGTTLFTILLPII
HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LMLVKTVAELYMEPGTALYTTLEFIGNPITAMFIAAFVAYYLLGLRNKMTMATLLTKTED
HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCH
SFASIANILLIIGAGGAFNGVLSGSGMGDSLAQILANLDMHPVLLAWLVAIILHAAVGSA
HHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TVAMMGATAIVSPLLVLYPDLNPVIVTLAIGSGAIGCTIVTDSLFWLVKQYTGATMKQTF
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
MYYTTATFIASLVALAATFALSYVI
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7592420; 3275618; 9205837; 9278503; 3029015; 1659648; 12218016 [H]