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The map label for this gene is dsdA [H]

Identifier: 167625467

GI number: 167625467

Start: 4343979

End: 4345301

Strand: Reverse

Name: dsdA [H]

Synonym: Shal_3561

Alternate gene names: 167625467

Gene position: 4345301-4343979 (Counterclockwise)

Preceding gene: 167625468

Following gene: 167625461

Centisome position: 83.13

GC content: 50.79

Gene sequence:

>1323_bases
ATGAATACTGCACAACTGATAAAAGATTTTCCTTTGCTAAGTAAGCTTATCAAGCTCGAAGAAGTCAGCTGGTTTGAGAC
TAAAGCGACAAACTTGGCTGAAGCCTTACCTTTTGTGGGATTGAACGGTGATGACGTAGCCGATGCTAGTGCGCGTTTAC
AACGCTTTGCACCATACCTAGCGCTAGCCTTCCCAGAAACCGCTGCATCTAACGGCATTATTGAATCTGAAGTGGTGGCC
ATTCCAAAGATGAAGCAAGCGCTAGAAGCCAAGTACGGCCAAGCGATTGCGGGTCAGCTGATGCTTAAAAAAGACAGCCA
CCTACCCATTTCAGGCTCTATCAAGGCGCGCGGTGGTATTTATGAAGTGCTGACCCATGCCGAGAAGCTGGCGATTGCCG
CAGGTAAATTGCAGGAGTCTGACGACTACCAGATGCTATTTACCGATGAGATGAAGAGCTTCTTTAACGGTTACAGCATC
GCAGTAGGCTCGACGGGTAACTTAGGTATGTCTATCGGCATCATGAGCGCTAAGCTTGGCTTTAACGTTAGCGTACATAT
GTCTGCCGATGCCCGTCAGTGGAAGAAAGATAAGTTACGTAGCCACGGTGTGAATGTATTTGAATATGAACAGGATTATG
GCGTTGCTGTTGAGCAGGGGCGTAAAGCGGCTGAATCTGACGCTAACTGTTTCTTCATCGATGATGAAAACTCGCGCACG
CTATTTTTAGGTTACTCGGTTGCCGGTGAGCGTTTGAAGGCGCAGTTTGACGCCGCAGAGATTAAGGTGGATAGCGAGCA
TCCGCTGTTTGTTTACCTACCTTGTGGTGTAGGCGGTGGCCCTGGCGGCGTGGCGTTTGGTCTTAAGCTAGCCTTTGGCG
ACAATGTACATTGCTTCTTTGCCGAACCGACGCATTCGCCTTGTATGTTACTGGGTGTACACACGGGTCTGCATGATGAA
ATCGCGGTACAAGATTTAGGTATCGATAATGTCACTGCAGCCGATGGCTTAGCGGTAGGGCGCGCATCAGGTTTTGTGGG
CCGCGCCATGGAGCACATGCTTGATGGTTACTACACCTTAAGTGACCAGCACATGTACGACCTGCTTGGCTTATTAGCTA
AGAGCGAGGGGATTGAGCTTGAGCCGTCAGCCCTTGCGGGTATGCCGGGCGCACTTAGAGTGAGCGGCGATAGTGACTAT
CAAGCGCGTACGGGGCTAACACCTGAGATGATGAGCAATGCGACGCACGTAGTGTGGGCGACGGGTGGCGGAATGGTGCC
AGCGGTTGAGATGGCAAAATACCTAGCGCAATCGGCGAGCTAA

Upstream 100 bases:

>100_bases
ATGTATTACACCACTGCAACCTTTATCGCCTCACTTGTGGCATTGGCTGCGACCTTCGCCTTGTCTTACGTAATTTAATT
CTGATAGTGGATTTGAAACA

Downstream 100 bases:

>100_bases
TTGTTCATAGGGTTAGTAGAGTTAGATTGCTAACGCCAAAAGAGCAGAGCTTGTTAGGCCGATTTTATTCGGCCTTGGCT
CTGCTTTTTATTGGCTATAC

Product: D-serine dehydratase

Products: NA

Alternate protein names: D-serine deaminase; DSD [H]

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MNTAQLIKDFPLLSKLIKLEEVSWFETKATNLAEALPFVGLNGDDVADASARLQRFAPYLALAFPETAASNGIIESEVVA
IPKMKQALEAKYGQAIAGQLMLKKDSHLPISGSIKARGGIYEVLTHAEKLAIAAGKLQESDDYQMLFTDEMKSFFNGYSI
AVGSTGNLGMSIGIMSAKLGFNVSVHMSADARQWKKDKLRSHGVNVFEYEQDYGVAVEQGRKAAESDANCFFIDDENSRT
LFLGYSVAGERLKAQFDAAEIKVDSEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVHTGLHDE
IAVQDLGIDNVTAADGLAVGRASGFVGRAMEHMLDGYYTLSDQHMYDLLGLLAKSEGIELEPSALAGMPGALRVSGDSDY
QARTGLTPEMMSNATHVVWATGGGMVPAVEMAKYLAQSAS

Sequences:

>Translated_440_residues
MNTAQLIKDFPLLSKLIKLEEVSWFETKATNLAEALPFVGLNGDDVADASARLQRFAPYLALAFPETAASNGIIESEVVA
IPKMKQALEAKYGQAIAGQLMLKKDSHLPISGSIKARGGIYEVLTHAEKLAIAAGKLQESDDYQMLFTDEMKSFFNGYSI
AVGSTGNLGMSIGIMSAKLGFNVSVHMSADARQWKKDKLRSHGVNVFEYEQDYGVAVEQGRKAAESDANCFFIDDENSRT
LFLGYSVAGERLKAQFDAAEIKVDSEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVHTGLHDE
IAVQDLGIDNVTAADGLAVGRASGFVGRAMEHMLDGYYTLSDQHMYDLLGLLAKSEGIELEPSALAGMPGALRVSGDSDY
QARTGLTPEMMSNATHVVWATGGGMVPAVEMAKYLAQSAS
>Mature_440_residues
MNTAQLIKDFPLLSKLIKLEEVSWFETKATNLAEALPFVGLNGDDVADASARLQRFAPYLALAFPETAASNGIIESEVVA
IPKMKQALEAKYGQAIAGQLMLKKDSHLPISGSIKARGGIYEVLTHAEKLAIAAGKLQESDDYQMLFTDEMKSFFNGYSI
AVGSTGNLGMSIGIMSAKLGFNVSVHMSADARQWKKDKLRSHGVNVFEYEQDYGVAVEQGRKAAESDANCFFIDDENSRT
LFLGYSVAGERLKAQFDAAEIKVDSEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVHTGLHDE
IAVQDLGIDNVTAADGLAVGRASGFVGRAMEHMLDGYYTLSDQHMYDLLGLLAKSEGIELEPSALAGMPGALRVSGDSDY
QARTGLTPEMMSNATHVVWATGGGMVPAVEMAKYLAQSAS

Specific function: Unknown

COG id: COG3048

COG function: function code E; D-serine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the serine/threonine dehydratase family. DsdA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788708, Length=437, Percent_Identity=73.2265446224256, Blast_Score=640, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011780
- InterPro:   IPR001926
- InterPro:   IPR000634 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.18 [H]

Molecular weight: Translated: 47112; Mature: 47112

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00165 DEHYDRATASE_SER_THR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAQLIKDFPLLSKLIKLEEVSWFETKATNLAEALPFVGLNGDDVADASARLQRFAPYL
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCE
ALAFPETAASNGIIESEVVAIPKMKQALEAKYGQAIAGQLMLKKDSHLPISGSIKARGGI
EEECCCHHCCCCCCCHHEEECHHHHHHHHHHHCHHHHCEEEEECCCCCCCCCCCCCCCCH
YEVLTHAEKLAIAAGKLQESDDYQMLFTDEMKSFFNGYSIAVGSTGNLGMSIGIMSAKLG
HHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCEEEEECCCCCCCEEEEEEEEECC
FNVSVHMSADARQWKKDKLRSHGVNVFEYEQDYGVAVEQGRKAAESDANCFFIDDENSRT
CEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCHHHCCCCCEEEEECCCCEE
LFLGYSVAGERLKAQFDAAEIKVDSEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFF
EEEEECCCCHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEEECCCEEEEE
AEPTHSPCMLLGVHTGLHDEIAVQDLGIDNVTAADGLAVGRASGFVGRAMEHMLDGYYTL
ECCCCCCEEEEEECCCCCCCHHHEECCCCCCCCCCCCEECCCCCHHHHHHHHHHCCEEEE
SDQHMYDLLGLLAKSEGIELEPSALAGMPGALRVSGDSDYQARTGLTPEMMSNATHVVWA
CCCHHHHHHHHHHCCCCCEECCHHHCCCCCEEEECCCCCCCHHCCCCHHHHCCCCEEEEE
TGGGMVPAVEMAKYLAQSAS
CCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTAQLIKDFPLLSKLIKLEEVSWFETKATNLAEALPFVGLNGDDVADASARLQRFAPYL
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCE
ALAFPETAASNGIIESEVVAIPKMKQALEAKYGQAIAGQLMLKKDSHLPISGSIKARGGI
EEECCCHHCCCCCCCHHEEECHHHHHHHHHHHCHHHHCEEEEECCCCCCCCCCCCCCCCH
YEVLTHAEKLAIAAGKLQESDDYQMLFTDEMKSFFNGYSIAVGSTGNLGMSIGIMSAKLG
HHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCEEEEECCCCCCCEEEEEEEEECC
FNVSVHMSADARQWKKDKLRSHGVNVFEYEQDYGVAVEQGRKAAESDANCFFIDDENSRT
CEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCHHHCCCCCEEEEECCCCEE
LFLGYSVAGERLKAQFDAAEIKVDSEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFF
EEEEECCCCHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEEECCCEEEEE
AEPTHSPCMLLGVHTGLHDEIAVQDLGIDNVTAADGLAVGRASGFVGRAMEHMLDGYYTL
ECCCCCCEEEEEECCCCCCCHHHEECCCCCCCCCCCCEECCCCCHHHHHHHHHHCCEEEE
SDQHMYDLLGLLAKSEGIELEPSALAGMPGALRVSGDSDYQARTGLTPEMMSNATHVVWA
CCCHHHHHHHHHHCCCCCEECCHHHCCCCCEEEECCCCCCCHHCCCCHHHHCCCCEEEEE
TGGGMVPAVEMAKYLAQSAS
CCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA