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The map label for this gene is sigV [H]

Identifier: 167625460

GI number: 167625460

Start: 4332565

End: 4333092

Strand: Reverse

Name: sigV [H]

Synonym: Shal_3552

Alternate gene names: 167625460

Gene position: 4333092-4332565 (Counterclockwise)

Preceding gene: 167625461

Following gene: 167625458

Centisome position: 82.9

GC content: 42.8

Gene sequence:

>528_bases
ATGAGCGTAGCTGCTAACAACCGAAATGATTTAATTATGGCCGCACAAACAGGAGACACCAAGGCTCTGACTCGTTTGTT
AGCCGTTTGTCAGCCAGACGCTCGTCGTTATGCTTATAAGCATTGCCATGCTAGTGATGTTGATGATGCGGTTCAAGAAT
CATTGCTAATTATCACGCGTAAAGTTGGCGGTCTTAAAGCCGCCGCAGCTTTTTCCTCTTGGTTATTTACCGTGATTAAA
CATGAATGTCGAAAACTCTCATCTAGAATGTTCAAACATGAACCTTTACCTGATGAAGTCGCTGAGGAGTTATTGTTATG
TCGCTCTGACCATGAGTTAAGAGTTGAACTTATAAAGGCATTTGAATCATTGCCAATCCATTATCTTGAAGTGGTATTGC
TCAGAGATTTTGAGGAGTTAACAATTACTGAAATGGCAACACGATTAAATGAGCCGACGGGGGCGGTCAAAAGTCGCTTG
CATCGCGCACGTGAGCTAGTCCGTGAATATATGATTGCACCAGACTAA

Upstream 100 bases:

>100_bases
AGTAATGTCGGACAGTGATAATACTTAAGCTGTAATGCAGCACTGATGAATGACATTATATTTAATTAATATATTGATAT
AGACATCAATAGGGTAAATT

Downstream 100 bases:

>100_bases
ATAGCCTAGCTTGTTCGCAATAAAAGGGGTTAAGGATGACATTTGTCCATAAGACTAAGGCTGTACAGCTATTCCTATCT
GTTAGAAAAGGATTGTCTCT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSVAANNRNDLIMAAQTGDTKALTRLLAVCQPDARRYAYKHCHASDVDDAVQESLLIITRKVGGLKAAAAFSSWLFTVIK
HECRKLSSRMFKHEPLPDEVAEELLLCRSDHELRVELIKAFESLPIHYLEVVLLRDFEELTITEMATRLNEPTGAVKSRL
HRARELVREYMIAPD

Sequences:

>Translated_175_residues
MSVAANNRNDLIMAAQTGDTKALTRLLAVCQPDARRYAYKHCHASDVDDAVQESLLIITRKVGGLKAAAAFSSWLFTVIK
HECRKLSSRMFKHEPLPDEVAEELLLCRSDHELRVELIKAFESLPIHYLEVVLLRDFEELTITEMATRLNEPTGAVKSRL
HRARELVREYMIAPD
>Mature_174_residues
SVAANNRNDLIMAAQTGDTKALTRLLAVCQPDARRYAYKHCHASDVDDAVQESLLIITRKVGGLKAAAAFSSWLFTVIKH
ECRKLSSRMFKHEPLPDEVAEELLLCRSDHELRVELIKAFESLPIHYLEVVLLRDFEELTITEMATRLNEPTGAVKSRLH
RARELVREYMIAPD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=175, Percent_Identity=26.2857142857143, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19886; Mature: 19755

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAANNRNDLIMAAQTGDTKALTRLLAVCQPDARRYAYKHCHASDVDDAVQESLLIITR
CCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KVGGLKAAAAFSSWLFTVIKHECRKLSSRMFKHEPLPDEVAEELLLCRSDHELRVELIKA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
FESLPIHYLEVVLLRDFEELTITEMATRLNEPTGAVKSRLHRARELVREYMIAPD
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVAANNRNDLIMAAQTGDTKALTRLLAVCQPDARRYAYKHCHASDVDDAVQESLLIITR
CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KVGGLKAAAAFSSWLFTVIKHECRKLSSRMFKHEPLPDEVAEELLLCRSDHELRVELIKA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
FESLPIHYLEVVLLRDFEELTITEMATRLNEPTGAVKSRLHRARELVREYMIAPD
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]