Click here to switch to the map view.

The map label for this gene is 167625422

Identifier: 167625422

GI number: 167625422

Start: 4287162

End: 4288055

Strand: Reverse

Name: 167625422

Synonym: Shal_3514

Alternate gene names: NA

Gene position: 4288055-4287162 (Counterclockwise)

Preceding gene: 167625423

Following gene: 167625421

Centisome position: 82.04

GC content: 45.86

Gene sequence:

>894_bases
ATGAGTCTATTTAAGTTTGGTTTAGCGGCAGATAAATCCGCGACGATTCGCAGAGAGTTAGGCAAAGATGCGGCGGCTTA
TTTTAAGGCTATGCAGGCTGCTGAAGAAACCTTTTTTCGCTCTATCACCACAACAGAGAATAGATTAAAACTCGATTGGT
TACAGCTGCGTACTCGCTTAATTACTCGAGTCGACGACAGCGAGCTCTCTCGGTTAACAGATTTCAATGTCGAGCTCATT
CAGAATGTGTCTGCAGAGCAAGATGGTCAGCCACGACAGATCTCGGTGGTAACGCTCGATTCGCTGCAGATGGCGATTGC
CGATATTGAGGCGCAGTCTTGGATAGGTTTCGATACCGAAACCGCGGCTACCTTTGAGAAGGGACGGCGCAATACTAACC
CCATTTCATTAATTCAAATAGCAACCGCAACACATTGCTATCTGTTTCGAATGCAAGCGATAAATATTGAGCCATTTAAG
GTGGCGCTCACACCAGTAATGAGCAATGAACATCTGCTTAAAATTGGTATTGGCCTGAGAAGCGATATCAATGGAATGAA
GCGAGACTTTGATATGAGTATTGCGGCGATGCTGGACTTAAATTGGCTGATGAATCAACTTGGGGCGCCTAAGCAACTTG
GCACACAGCAGGCCGCTGCAACAGTTTTAGCGTTAAAACTACCCAAAAGTAAAAAGGTCACATTATCGAATTGGAGCAAG
CCACTAACAGAACCCTTGAGTGAGCTGCAGCTGCAGTATGCGGCGGCAGATACCTTTGTAGCATTGGATATTTTACATGC
AGTAACAGCACAAGTTGCCCCTTATCAGAGCTTATGGCCACAATCGCTACAGCAACGTTTAGCTGAGTTAACGATGAGAA
GAGGGAGCGTTTGA

Upstream 100 bases:

>100_bases
GAGTAAAAGTCCATGAGGCTATGGAAGTAAATCATGGTTTAATGTGGGTTACACTTTGAGCCTGCGCGAACGGGATAAGC
ATGAGATATAGAGTAAATCG

Downstream 100 bases:

>100_bases
TGATACATAAAGGTCAATTAGTACGATGGAACGATGCGAAAGGCTTTGGTTTTATTCGTATCGAGCAGGCTCATGATATT
AATCAACCTGCTAACGCCAA

Product: 3'-5' exonuclease

Products: NA

Alternate protein names: 3-5' Exonuclease Domain Protein; 3 Exoribonuclease Family Protein; 3- 5' Exonuclease Domain Protein; Ribonuclease D; Exonuclease

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSLFKFGLAADKSATIRRELGKDAAAYFKAMQAAEETFFRSITTTENRLKLDWLQLRTRLITRVDDSELSRLTDFNVELI
QNVSAEQDGQPRQISVVTLDSLQMAIADIEAQSWIGFDTETAATFEKGRRNTNPISLIQIATATHCYLFRMQAINIEPFK
VALTPVMSNEHLLKIGIGLRSDINGMKRDFDMSIAAMLDLNWLMNQLGAPKQLGTQQAAATVLALKLPKSKKVTLSNWSK
PLTEPLSELQLQYAAADTFVALDILHAVTAQVAPYQSLWPQSLQQRLAELTMRRGSV

Sequences:

>Translated_297_residues
MSLFKFGLAADKSATIRRELGKDAAAYFKAMQAAEETFFRSITTTENRLKLDWLQLRTRLITRVDDSELSRLTDFNVELI
QNVSAEQDGQPRQISVVTLDSLQMAIADIEAQSWIGFDTETAATFEKGRRNTNPISLIQIATATHCYLFRMQAINIEPFK
VALTPVMSNEHLLKIGIGLRSDINGMKRDFDMSIAAMLDLNWLMNQLGAPKQLGTQQAAATVLALKLPKSKKVTLSNWSK
PLTEPLSELQLQYAAADTFVALDILHAVTAQVAPYQSLWPQSLQQRLAELTMRRGSV
>Mature_296_residues
SLFKFGLAADKSATIRRELGKDAAAYFKAMQAAEETFFRSITTTENRLKLDWLQLRTRLITRVDDSELSRLTDFNVELIQ
NVSAEQDGQPRQISVVTLDSLQMAIADIEAQSWIGFDTETAATFEKGRRNTNPISLIQIATATHCYLFRMQAINIEPFKV
ALTPVMSNEHLLKIGIGLRSDINGMKRDFDMSIAAMLDLNWLMNQLGAPKQLGTQQAAATVLALKLPKSKKVTLSNWSKP
LTEPLSELQLQYAAADTFVALDILHAVTAQVAPYQSLWPQSLQQRLAELTMRRGSV

Specific function: Unknown

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI110735439, Length=167, Percent_Identity=27.5449101796407, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33205; Mature: 33073

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFKFGLAADKSATIRRELGKDAAAYFKAMQAAEETFFRSITTTENRLKLDWLQLRTRL
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ITRVDDSELSRLTDFNVELIQNVSAEQDGQPRQISVVTLDSLQMAIADIEAQSWIGFDTE
HHCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCH
TAATFEKGRRNTNPISLIQIATATHCYLFRMQAINIEPFKVALTPVMSNEHLLKIGIGLR
HHHHHHHCCCCCCCEEEEEEHHHHHEEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCH
SDINGMKRDFDMSIAAMLDLNWLMNQLGAPKQLGTQQAAATVLALKLPKSKKVTLSNWSK
HCCCHHHHHHCHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHEEECCCCCEEECCCCCC
PLTEPLSELQLQYAAADTFVALDILHAVTAQVAPYQSLWPQSLQQRLAELTMRRGSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLFKFGLAADKSATIRRELGKDAAAYFKAMQAAEETFFRSITTTENRLKLDWLQLRTRL
CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ITRVDDSELSRLTDFNVELIQNVSAEQDGQPRQISVVTLDSLQMAIADIEAQSWIGFDTE
HHCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCH
TAATFEKGRRNTNPISLIQIATATHCYLFRMQAINIEPFKVALTPVMSNEHLLKIGIGLR
HHHHHHHCCCCCCCEEEEEEHHHHHEEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCH
SDINGMKRDFDMSIAAMLDLNWLMNQLGAPKQLGTQQAAATVLALKLPKSKKVTLSNWSK
HCCCHHHHHHCHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHEEECCCCCEEECCCCCC
PLTEPLSELQLQYAAADTFVALDILHAVTAQVAPYQSLWPQSLQQRLAELTMRRGSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA