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The map label for this gene is ybjY [C]

Identifier: 167625348

GI number: 167625348

Start: 4184867

End: 4186129

Strand: Reverse

Name: ybjY [C]

Synonym: Shal_3437

Alternate gene names: 167625348

Gene position: 4186129-4184867 (Counterclockwise)

Preceding gene: 167625357

Following gene: 167625347

Centisome position: 80.09

GC content: 50.91

Gene sequence:

>1263_bases
ATGATTTCGGATACAAGCGGACAAGACACTATCAAGCAACCAAGTAAGGCGAGCAAGTTTAAGCATCCAGCGATGTTTGG
TATCGCTGCATTACTGGTTTCTTGTCTAGTTTGGTCAAGCATGGATAGCGACTCAATTGCAACATCGATTAAACGCTCAG
AGCTTCGTTTTGCCACATTAGAGCGCGGTACGCTTGTTCGCGATATTCCGACAACAGGCAAGATTGTTGCTGCTAATGCC
CCCGTTCTGTATAGCCCAGAGCAGGGGGCTGTGACTTTAATCGCCAGACCCGGTGACAGGGTCGCTCAAGGTGATGTTGT
GGCCACCATTGAGAGCCATAAGTTAACGAATGGTTTAAAGCAGCAACAAGCCTTACTAGAGGGAATGAAAAGCTCGCTTG
AGCGTGCTCGTCTCAATGCGCGTCGAGCGCAACTTAAAGCGCAGCAAACGCTAGATATGGCTAAGGTCGATATGGCGGCG
GCCGAGCGCGAGAGTCGCCGTGGCGATCAGCTAATCGAGTCAAAGCTAATTAGCAAAATCGACTTTGAAAAGAGTAAAGA
CGACCTGCATAAGGCCAAATTGCTATTTGCCCATGCGGGTCAAGAAGCGCTGCTGATGAAAGACACCTTAACCTTTGAGC
TTAAGAACACCGCGCTGGAAGTTGACCGTCAGGCGCTGGTGGTCAAAGAGCTCGAACGCCAAGTGGCGGCACTGAATATC
ATCGCGCCCGTTGCTGGCATTATTGGTAATTGGCTTACGGAACAAAAGGCGCGTATTAGCCAGAGCCAACCGATTCTTAC
GGTTGTCGATCTCAGTGCTTTTGAAGCAGAACTCGCGGTACCTGAGTCCTACGCCGATGAGCTAGGCATAGGTATGACGG
TAGAGCTGAGTTTTGGCTCGGTGAGAGTGATGGGCGAGCTATCTTCTATTTCTCCCGAGGTGCGTAACCGGGAAGTGAGC
GCAAGGGTGCGATTTGAGCAAAATGACCATCTGCCGCTACGCCAGAACCAGCGTCTTTCAGCGCGAGTATTACTGGAGCA
CAGAGCCGATGTGTTGATGGTTAAGCGCGGCGCCTTTGTTAATAGCGGTGGTGGCCAAGAGGTTTACGTCATGCACGATG
ATATTGCCGAGCAAACATCGATCCAATTAGGAGCGCGTAGCATGAGTCATATCGAAGTGATCCAAGGTGGACAGGTGGGC
GATGTTTGGGTCACCTCAAGCGTCGAGCCATTTAACAAAGCCGTACAAGTATTGGTCCGCTAG

Upstream 100 bases:

>100_bases
CTTGTTGTTTATTTGTGATTTATTGTTTTTGGCATGGTGCTTGTATTAATAGATCTATCGAAAGCGAAAATGCTTAGAAC
GGACACTTTAGGGACTGCAG

Downstream 100 bases:

>100_bases
TCAGGTAAGGAAGCAGACGATGAATAAGGCAATGAATAAATTTAGACAAGTTAATAAGCAGCAAATAGCTACAGTAGCAG
TATTAATGCTGCTGGTTGTT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; ABC Transporter Permease; HlyD Family Secretion Protein; Efflux Transporter Rnd Family Mfp Subunit; Efflux Transporter MFP Component RND Family; Secretion Protein HlyD; Efflux Transporter MFP Component RND Family Protein; HlyD-Like Secretion Protein; Macrolide Transporter Subunit MacA; Efflux Transporter; ABC Transporter Component Protein; Secretion Protein HlyD Family Protein; Membrane-Fusion Protein; HlyD Family Transporter Protein; Membrane Fusion Protein; HlyD Family Transporter; Efflux System; ABC Transporter Permease Protein

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MISDTSGQDTIKQPSKASKFKHPAMFGIAALLVSCLVWSSMDSDSIATSIKRSELRFATLERGTLVRDIPTTGKIVAANA
PVLYSPEQGAVTLIARPGDRVAQGDVVATIESHKLTNGLKQQQALLEGMKSSLERARLNARRAQLKAQQTLDMAKVDMAA
AERESRRGDQLIESKLISKIDFEKSKDDLHKAKLLFAHAGQEALLMKDTLTFELKNTALEVDRQALVVKELERQVAALNI
IAPVAGIIGNWLTEQKARISQSQPILTVVDLSAFEAELAVPESYADELGIGMTVELSFGSVRVMGELSSISPEVRNREVS
ARVRFEQNDHLPLRQNQRLSARVLLEHRADVLMVKRGAFVNSGGGQEVYVMHDDIAEQTSIQLGARSMSHIEVIQGGQVG
DVWVTSSVEPFNKAVQVLVR

Sequences:

>Translated_420_residues
MISDTSGQDTIKQPSKASKFKHPAMFGIAALLVSCLVWSSMDSDSIATSIKRSELRFATLERGTLVRDIPTTGKIVAANA
PVLYSPEQGAVTLIARPGDRVAQGDVVATIESHKLTNGLKQQQALLEGMKSSLERARLNARRAQLKAQQTLDMAKVDMAA
AERESRRGDQLIESKLISKIDFEKSKDDLHKAKLLFAHAGQEALLMKDTLTFELKNTALEVDRQALVVKELERQVAALNI
IAPVAGIIGNWLTEQKARISQSQPILTVVDLSAFEAELAVPESYADELGIGMTVELSFGSVRVMGELSSISPEVRNREVS
ARVRFEQNDHLPLRQNQRLSARVLLEHRADVLMVKRGAFVNSGGGQEVYVMHDDIAEQTSIQLGARSMSHIEVIQGGQVG
DVWVTSSVEPFNKAVQVLVR
>Mature_420_residues
MISDTSGQDTIKQPSKASKFKHPAMFGIAALLVSCLVWSSMDSDSIATSIKRSELRFATLERGTLVRDIPTTGKIVAANA
PVLYSPEQGAVTLIARPGDRVAQGDVVATIESHKLTNGLKQQQALLEGMKSSLERARLNARRAQLKAQQTLDMAKVDMAA
AERESRRGDQLIESKLISKIDFEKSKDDLHKAKLLFAHAGQEALLMKDTLTFELKNTALEVDRQALVVKELERQVAALNI
IAPVAGIIGNWLTEQKARISQSQPILTVVDLSAFEAELAVPESYADELGIGMTVELSFGSVRVMGELSSISPEVRNREVS
ARVRFEQNDHLPLRQNQRLSARVLLEHRADVLMVKRGAFVNSGGGQEVYVMHDDIAEQTSIQLGARSMSHIEVIQGGQVG
DVWVTSSVEPFNKAVQVLVR

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46010; Mature: 46010

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISDTSGQDTIKQPSKASKFKHPAMFGIAALLVSCLVWSSMDSDSIATSIKRSELRFATL
CCCCCCCCCHHCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEE
ERGTLVRDIPTTGKIVAANAPVLYSPEQGAVTLIARPGDRVAQGDVVATIESHKLTNGLK
CCCCEEEECCCCCEEEEECCCEEECCCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHHH
QQQALLEGMKSSLERARLNARRAQLKAQQTLDMAKVDMAAAERESRRGDQLIESKLISKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFEKSKDDLHKAKLLFAHAGQEALLMKDTLTFELKNTALEVDRQALVVKELERQVAALNI
CCCCCHHHHHHHHHHHEECCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
IAPVAGIIGNWLTEQKARISQSQPILTVVDLSAFEAELAVPESYADELGIGMTVELSFGS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCHHHHHHCCCCEEEEEECCC
VRVMGELSSISPEVRNREVSARVRFEQNDHLPLRQNQRLSARVLLEHRADVLMVKRGAFV
EEEEECHHHCCHHHHCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEE
NSGGGQEVYVMHDDIAEQTSIQLGARSMSHIEVIQGGQVGDVWVTSSVEPFNKAVQVLVR
ECCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MISDTSGQDTIKQPSKASKFKHPAMFGIAALLVSCLVWSSMDSDSIATSIKRSELRFATL
CCCCCCCCCHHCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEE
ERGTLVRDIPTTGKIVAANAPVLYSPEQGAVTLIARPGDRVAQGDVVATIESHKLTNGLK
CCCCEEEECCCCCEEEEECCCEEECCCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHHH
QQQALLEGMKSSLERARLNARRAQLKAQQTLDMAKVDMAAAERESRRGDQLIESKLISKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFEKSKDDLHKAKLLFAHAGQEALLMKDTLTFELKNTALEVDRQALVVKELERQVAALNI
CCCCCHHHHHHHHHHHEECCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
IAPVAGIIGNWLTEQKARISQSQPILTVVDLSAFEAELAVPESYADELGIGMTVELSFGS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCHHHHHHCCCCEEEEEECCC
VRVMGELSSISPEVRNREVSARVRFEQNDHLPLRQNQRLSARVLLEHRADVLMVKRGAFV
EEEEECHHHCCHHHHCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEE
NSGGGQEVYVMHDDIAEQTSIQLGARSMSHIEVIQGGQVGDVWVTSSVEPFNKAVQVLVR
ECCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA