| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is purP [H]
Identifier: 167625227
GI number: 167625227
Start: 4044020
End: 4045405
Strand: Reverse
Name: purP [H]
Synonym: Shal_3315
Alternate gene names: 167625227
Gene position: 4045405-4044020 (Counterclockwise)
Preceding gene: 167625229
Following gene: 167625225
Centisome position: 77.4
GC content: 48.27
Gene sequence:
>1386_bases ATGAGTACGCCAAGCAATAAACAACATGCTGCAACTAATGAAGAGCCTGCAGAAGCTTGTGCTTCTGCCCAACCTGCAAG TGGTGGGTTGTTAGAGCGCTTTTTTAAATTATCAGCCCACAACACCACTGTATCTACCGAAGTTATAGCGGGCATTACCA CCTTCATGACCATGGTGTATATCGTGTTCGTGAATCCACAAATTCTATCGGCTGCTGGTATGGATGCCAGTGCGGTATTT GTGGTCACCTGTTTGATCAGCGCTATCGGCTGTATCGCCATGGGCTTAATTGCCAATCTGCCAATTGCACTAGCGCCTGC AATGGGTCTAAATGCGTTTTTTGCCTTCTCTGTAGTAGTGGGGATGGGCGTAAGCTGGCAAATCGGTATGGGCACCATTT TTTGGGGCGCAGTTTGTTTTGCTATTGTGTCCTTACTTGGGATCCGTTCTTGGATCTTAACCAATATCCCAAAATGTTTA CGTATTGGTATTCCTAGCGGTATCGGTTTGCTGATAGCCATGGTTGGCTTTAGTAATGCCGGCATTGTGGTCGCAAGTCC AGCGACTATGATCACCGTTGGCGACTTAAGCTCACTGCAGTGTGTTTTAGGTGCGCTAGGTTTCTTTATTATCGTAATTC TAGCCTCTCGTGGTATTCATTCCGCTGTGCTGGTCTCGATTGCCGTTGTGACTGCCATAGCGGCCCTGATGGGGGATATT GAGTACACTGGCATCGTGTCTATGCCGCCTAGTATCGCTAATACCTTTGGTCAGCTCGATCTTGCAGGTTCATTAGATGT GGCGTTGATGGGCGTTATTTTCTCATTTGCCTTAGTAAGCCTTTTCGATAGTTCTGGCACCATGATTGGCGTCACTGAAA AGTGCGGTTTCACTGATGAGCGCGGCCGTTTCCCACGTATGAAACAAGCCTTGATGACAGACTCTGCAACTTCTGTTGTT GGCGCTTACATGGGCACATCAACGGTAACGGCTTACATTGAAAGCTCGGCAGGTGTCGCTGCGGGTGGCCGTACCGGTTT AACCGCAATCGTTGCCGGTCTACTGTTTGTTTTGGTGATTTTCTTCTCGCCATTGGCGGCTATGGTACCGGGTTACGCGG TTGCTGGCGCGCTGGTTTATGTCGGTATTTTGATGTCATCAGAACTGGCTAAAATTGATGGTAAAGACTTAACCGAGTCG GCTCCAGCCTTTATCACCGCAGTGATGATGCCATTTACCTTCTCAATCACCGAAGGCGTAGCAGCAGGTTTTATTACTTA CTGCGTATTGAAAGCGGGCACCAATCGCTGGCGTGAAATCCACCCTGGTGTGGCGCTAGTGGCACTGCTATTTATTATCA AGTTTGCCTTTGTTGATGGGCATTAA
Upstream 100 bases:
>100_bases TTTCAGGGGATCAAGTGTGTGCGTCGTAAATTTAATATTGATGTTGCACAGCTGTTTGGGACGCGGGTTGAGTGAAGTTA AAAGTGGAAATAATCTATTT
Downstream 100 bases:
>100_bases TTCTACTCGCTTAAATGAGTAGCTTGTAAAAGTGATAAACAAATAAAAGGCTCAGAAGGATTACCTTCTGAGCCTTTTTT ATATGACTAGATTTACAAAG
Product: xanthine/uracil/vitamin C permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 461; Mature: 460
Protein sequence:
>461_residues MSTPSNKQHAATNEEPAEACASAQPASGGLLERFFKLSAHNTTVSTEVIAGITTFMTMVYIVFVNPQILSAAGMDASAVF VVTCLISAIGCIAMGLIANLPIALAPAMGLNAFFAFSVVVGMGVSWQIGMGTIFWGAVCFAIVSLLGIRSWILTNIPKCL RIGIPSGIGLLIAMVGFSNAGIVVASPATMITVGDLSSLQCVLGALGFFIIVILASRGIHSAVLVSIAVVTAIAALMGDI EYTGIVSMPPSIANTFGQLDLAGSLDVALMGVIFSFALVSLFDSSGTMIGVTEKCGFTDERGRFPRMKQALMTDSATSVV GAYMGTSTVTAYIESSAGVAAGGRTGLTAIVAGLLFVLVIFFSPLAAMVPGYAVAGALVYVGILMSSELAKIDGKDLTES APAFITAVMMPFTFSITEGVAAGFITYCVLKAGTNRWREIHPGVALVALLFIIKFAFVDGH
Sequences:
>Translated_461_residues MSTPSNKQHAATNEEPAEACASAQPASGGLLERFFKLSAHNTTVSTEVIAGITTFMTMVYIVFVNPQILSAAGMDASAVF VVTCLISAIGCIAMGLIANLPIALAPAMGLNAFFAFSVVVGMGVSWQIGMGTIFWGAVCFAIVSLLGIRSWILTNIPKCL RIGIPSGIGLLIAMVGFSNAGIVVASPATMITVGDLSSLQCVLGALGFFIIVILASRGIHSAVLVSIAVVTAIAALMGDI EYTGIVSMPPSIANTFGQLDLAGSLDVALMGVIFSFALVSLFDSSGTMIGVTEKCGFTDERGRFPRMKQALMTDSATSVV GAYMGTSTVTAYIESSAGVAAGGRTGLTAIVAGLLFVLVIFFSPLAAMVPGYAVAGALVYVGILMSSELAKIDGKDLTES APAFITAVMMPFTFSITEGVAAGFITYCVLKAGTNRWREIHPGVALVALLFIIKFAFVDGH >Mature_460_residues STPSNKQHAATNEEPAEACASAQPASGGLLERFFKLSAHNTTVSTEVIAGITTFMTMVYIVFVNPQILSAAGMDASAVFV VTCLISAIGCIAMGLIANLPIALAPAMGLNAFFAFSVVVGMGVSWQIGMGTIFWGAVCFAIVSLLGIRSWILTNIPKCLR IGIPSGIGLLIAMVGFSNAGIVVASPATMITVGDLSSLQCVLGALGFFIIVILASRGIHSAVLVSIAVVTAIAALMGDIE YTGIVSMPPSIANTFGQLDLAGSLDVALMGVIFSFALVSLFDSSGTMIGVTEKCGFTDERGRFPRMKQALMTDSATSVVG AYMGTSTVTAYIESSAGVAAGGRTGLTAIVAGLLFVLVIFFSPLAAMVPGYAVAGALVYVGILMSSELAKIDGKDLTESA PAFITAVMMPFTFSITEGVAAGFITYCVLKAGTNRWREIHPGVALVALLFIIKFAFVDGH
Specific function: High-affinity uptake of adenine [H]
COG id: COG2252
COG function: function code R; Permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790150, Length=440, Percent_Identity=65, Blast_Score=574, Evalue=1e-165, Organism=Escherichia coli, GI87082309, Length=431, Percent_Identity=60.7888631090487, Blast_Score=536, Evalue=1e-153, Organism=Escherichia coli, GI1790499, Length=438, Percent_Identity=36.986301369863, Blast_Score=284, Evalue=1e-77, Organism=Escherichia coli, GI48994909, Length=431, Percent_Identity=35.9628770301624, Blast_Score=261, Evalue=8e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 47600; Mature: 47469
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPSNKQHAATNEEPAEACASAQPASGGLLERFFKLSAHNTTVSTEVIAGITTFMTMVY CCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IVFVNPQILSAAGMDASAVFVVTCLISAIGCIAMGLIANLPIALAPAMGLNAFFAFSVVV HHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH GMGVSWQIGMGTIFWGAVCFAIVSLLGIRSWILTNIPKCLRIGIPSGIGLLIAMVGFSNA HCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCCC GIVVASPATMITVGDLSSLQCVLGALGFFIIVILASRGIHSAVLVSIAVVTAIAALMGDI CEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC EYTGIVSMPPSIANTFGQLDLAGSLDVALMGVIFSFALVSLFDSSGTMIGVTEKCGFTDE CCCEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC RGRFPRMKQALMTDSATSVVGAYMGTSTVTAYIESSAGVAAGGRTGLTAIVAGLLFVLVI CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHH FFSPLAAMVPGYAVAGALVYVGILMSSELAKIDGKDLTESAPAFITAVMMPFTFSITEGV HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH AAGFITYCVLKAGTNRWREIHPGVALVALLFIIKFAFVDGH HHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STPSNKQHAATNEEPAEACASAQPASGGLLERFFKLSAHNTTVSTEVIAGITTFMTMVY CCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IVFVNPQILSAAGMDASAVFVVTCLISAIGCIAMGLIANLPIALAPAMGLNAFFAFSVVV HHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH GMGVSWQIGMGTIFWGAVCFAIVSLLGIRSWILTNIPKCLRIGIPSGIGLLIAMVGFSNA HCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCCC GIVVASPATMITVGDLSSLQCVLGALGFFIIVILASRGIHSAVLVSIAVVTAIAALMGDI CEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC EYTGIVSMPPSIANTFGQLDLAGSLDVALMGVIFSFALVSLFDSSGTMIGVTEKCGFTDE CCCEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC RGRFPRMKQALMTDSATSVVGAYMGTSTVTAYIESSAGVAAGGRTGLTAIVAGLLFVLVI CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHH FFSPLAAMVPGYAVAGALVYVGILMSSELAKIDGKDLTESAPAFITAVMMPFTFSITEGV HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH AAGFITYCVLKAGTNRWREIHPGVALVALLFIIKFAFVDGH HHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7686882; 9278503 [H]