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The map label for this gene is secD [H]

Identifier: 167625070

GI number: 167625070

Start: 3854583

End: 3856397

Strand: Reverse

Name: secD [H]

Synonym: Shal_3158

Alternate gene names: 167625070

Gene position: 3856397-3854583 (Counterclockwise)

Preceding gene: 167625071

Following gene: 167625069

Centisome position: 73.78

GC content: 47.88

Gene sequence:

>1815_bases
ATGATAGAACAGAAAAAAGTGACAATCTTAAACCATTACAGTGCATGGAAGTATGTGCTATTAGTCGTCACTATCACCGT
TATGTTATTCAGTGCATTACCTACTTTTTTTGGTGAAGACGCAGCGGTGCAGATCAGTGATAAGGCAGGGTTAAAAGTTA
ACGCTTTGGAGCTACACCAGCTGCTCGTATCTCAAGGTGTCAGCGTTAAGCGTATCGATCAATCTAATGATCAAACCTTG
ATTGTGCTCGACGACAATTCACAACAGAGTCGGCTTAAGACCTTACTTGCAAGCCAAGTTAACGATCCTTCAAAGCTTAC
CCTTACGCTAGCGCCTGCTGCGCCAAACTGGCTATTATCACTCGGTTTTAACCCTATTAAGTTGGGGCTGGATCTGCGTG
GCGGGGTACAATTTCTACTCGATGTTGAAATTGAACCGGTCTATAAGCTGCACTCCAACACGTTTATTGAGTCCGTTAGG
CAATTTGCACGTGAACAGTCGCTATATGGTGTCACGATTCGGGAGCGGGTTGACGGTAATGTTAATATAGCAACGACTGA
CTTAGCGCAAAGAGCGGCGATAAGGCAGTTTATCAATACACAATATCCCAATTGGCAAATCACTAATTCTGGAGAGCAAT
CCCTAGATGCTGGCCTGTCTGAAGCTGAAAAAACGAATATTCGCGATCTGACGGTGAAGCAAAACTTGCAGATCATGCGC
AGCCGTATCGAGCAGCTTGGGATCAGCGAGGCTGTTGTTCAGCGTCAAGGAGAGCACCGAATTCGCATCGAGCTTCCTGG
TGTACAAGATCCAGCGGCCGCCAAGTCTGTGATTGGCGCTACCGCAAGCCTAGCTTTCTATCAGGTAATGCAGCCGGGCT
CAGTTAATGCCAAGGTATTGAAAGATGAGCAGGGCGCGCCTGTGTATGTCGCCAGACGTGCGGTACTAGGCGGTGAGCAT
ATTGTCGATGCCAGAGCGTCACTTGGTGAGATGGGGCTACCTGAGGTGGTTATTCATCTAGACCGAGATGGCGGTAAAAC
CATGTCGGACTTTTCTCGTGACAATATTGGTAAGCCGATGGCAACCGCATACAGCGAGTATAGCCGTGGCGATAATGGCA
AAATTAGACAAACAACAGAAGTGATCAGTGTCGCGACGATTCAAGCGCAATTAGGGGATCGTTTTAGCATTACCGGCTCC
GCTGACTATGCCAGTGCACAGCAGCTGGCTTTATTGCTTCGAGCGGGCTCGATGACAGCGCCAGTGACTATCGTTGAAGA
GCGCACTATCGGTCCAAGCTTGGGCGAAGAAAACATCACCAATGGTTTCTCTGCGCTGGCTTTAGGTATGGCGGTGACGT
TGTTGTTTATGGGGCTTTGGTACCGCCGCTTAGGCTGGATAGCGAACGTGGCGCTTATAGCCAATATGATCCTTATTTTT
GGCTTGATGGCACTGATCCCTGGCGCGGTTTTAACCTTACCTGGCATAGCCGGCTTAGTGTTAACCGTCGGTATGGCAGT
GGATACTAACGTGCTTATTTTTGAGCGAATTAAGGACAAATTAAAAGAGGGGCGGAGCTTTGCTCATGCCATTGACAGAG
GCTTTGATAGTGCATTTTCAACCATTGTAGACGCCAATTTCACCACGATGATCACCGCGGTGGTGCTTTATGCCATAGGT
AACGGACCCATCCAAGGTTTTGCGTTAACTCTGGGTTTAGGCCTGCTAACCAGTATGTTTACCGGAATTTTTGCATCCAG
AGCATTAGTTAACTGGGCATATGGTCGTAATTTTAGTCGTAACGTGAAGGTGTAA

Upstream 100 bases:

>100_bases
AGGTATTAAATTTTTAGTACCAGCCCCGTTTCACTCTGGGGAACCTGTGGTTAATGGTGAGTTGCTATCACACGTTTAGT
GAATTTAAAGAGCAAAAAAT

Downstream 100 bases:

>100_bases
TATGGAACTTAATAATTTTAATAAACTAAGCAAATTGACAAAAGCACGTTACCTCTCGAGTATCTTCTCTGTGCTGATTA
TGCTGTCATCGATAGGCATT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MIEQKKVTILNHYSAWKYVLLVVTITVMLFSALPTFFGEDAAVQISDKAGLKVNALELHQLLVSQGVSVKRIDQSNDQTL
IVLDDNSQQSRLKTLLASQVNDPSKLTLTLAPAAPNWLLSLGFNPIKLGLDLRGGVQFLLDVEIEPVYKLHSNTFIESVR
QFAREQSLYGVTIRERVDGNVNIATTDLAQRAAIRQFINTQYPNWQITNSGEQSLDAGLSEAEKTNIRDLTVKQNLQIMR
SRIEQLGISEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVMQPGSVNAKVLKDEQGAPVYVARRAVLGGEH
IVDARASLGEMGLPEVVIHLDRDGGKTMSDFSRDNIGKPMATAYSEYSRGDNGKIRQTTEVISVATIQAQLGDRFSITGS
ADYASAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFSALALGMAVTLLFMGLWYRRLGWIANVALIANMILIF
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYAIG
NGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRNFSRNVKV

Sequences:

>Translated_604_residues
MIEQKKVTILNHYSAWKYVLLVVTITVMLFSALPTFFGEDAAVQISDKAGLKVNALELHQLLVSQGVSVKRIDQSNDQTL
IVLDDNSQQSRLKTLLASQVNDPSKLTLTLAPAAPNWLLSLGFNPIKLGLDLRGGVQFLLDVEIEPVYKLHSNTFIESVR
QFAREQSLYGVTIRERVDGNVNIATTDLAQRAAIRQFINTQYPNWQITNSGEQSLDAGLSEAEKTNIRDLTVKQNLQIMR
SRIEQLGISEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVMQPGSVNAKVLKDEQGAPVYVARRAVLGGEH
IVDARASLGEMGLPEVVIHLDRDGGKTMSDFSRDNIGKPMATAYSEYSRGDNGKIRQTTEVISVATIQAQLGDRFSITGS
ADYASAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFSALALGMAVTLLFMGLWYRRLGWIANVALIANMILIF
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYAIG
NGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRNFSRNVKV
>Mature_604_residues
MIEQKKVTILNHYSAWKYVLLVVTITVMLFSALPTFFGEDAAVQISDKAGLKVNALELHQLLVSQGVSVKRIDQSNDQTL
IVLDDNSQQSRLKTLLASQVNDPSKLTLTLAPAAPNWLLSLGFNPIKLGLDLRGGVQFLLDVEIEPVYKLHSNTFIESVR
QFAREQSLYGVTIRERVDGNVNIATTDLAQRAAIRQFINTQYPNWQITNSGEQSLDAGLSEAEKTNIRDLTVKQNLQIMR
SRIEQLGISEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVMQPGSVNAKVLKDEQGAPVYVARRAVLGGEH
IVDARASLGEMGLPEVVIHLDRDGGKTMSDFSRDNIGKPMATAYSEYSRGDNGKIRQTTEVISVATIQAQLGDRFSITGS
ADYASAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFSALALGMAVTLLFMGLWYRRLGWIANVALIANMILIF
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYAIG
NGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRNFSRNVKV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=608, Percent_Identity=43.5855263157895, Blast_Score=502, Evalue=1e-143,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65652; Mature: 65652

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQKKVTILNHYSAWKYVLLVVTITVMLFSALPTFFGEDAAVQISDKAGLKVNALELHQ
CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHH
LLVSQGVSVKRIDQSNDQTLIVLDDNSQQSRLKTLLASQVNDPSKLTLTLAPAAPNWLLS
HHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEE
LGFNPIKLGLDLRGGVQFLLDVEIEPVYKLHSNTFIESVRQFAREQSLYGVTIRERVDGN
CCCCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCC
VNIATTDLAQRAAIRQFINTQYPNWQITNSGEQSLDAGLSEAEKTNIRDLTVKQNLQIMR
CEEEEHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCHHHHHCCCCEEHHHHHHHHHH
SRIEQLGISEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVMQPGSVNAKVL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
KDEQGAPVYVARRAVLGGEHIVDARASLGEMGLPEVVIHLDRDGGKTMSDFSRDNIGKPM
ECCCCCCEEEEHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCH
ATAYSEYSRGDNGKIRQTTEVISVATIQAQLGDRFSITGSADYASAQQLALLLRAGSMTA
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPSLGEENITNGFSALALGMAVTLLFMGLWYRRLGWIANVALIANMILIF
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIVDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRNFSR
HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NVKV
CCCC
>Mature Secondary Structure
MIEQKKVTILNHYSAWKYVLLVVTITVMLFSALPTFFGEDAAVQISDKAGLKVNALELHQ
CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHH
LLVSQGVSVKRIDQSNDQTLIVLDDNSQQSRLKTLLASQVNDPSKLTLTLAPAAPNWLLS
HHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEE
LGFNPIKLGLDLRGGVQFLLDVEIEPVYKLHSNTFIESVRQFAREQSLYGVTIRERVDGN
CCCCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCC
VNIATTDLAQRAAIRQFINTQYPNWQITNSGEQSLDAGLSEAEKTNIRDLTVKQNLQIMR
CEEEEHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCHHHHHCCCCEEHHHHHHHHHH
SRIEQLGISEAVVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYQVMQPGSVNAKVL
HHHHHCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
KDEQGAPVYVARRAVLGGEHIVDARASLGEMGLPEVVIHLDRDGGKTMSDFSRDNIGKPM
ECCCCCCEEEEHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCH
ATAYSEYSRGDNGKIRQTTEVISVATIQAQLGDRFSITGSADYASAQQLALLLRAGSMTA
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
PVTIVEERTIGPSLGEENITNGFSALALGMAVTLLFMGLWYRRLGWIANVALIANMILIF
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFS
HHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIVDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRNFSR
HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NVKV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]